View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11559_low_3 (Length: 520)
Name: NF11559_low_3
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 213 - 504
Target Start/End: Original strand, 26787183 - 26787474
Alignment:
| Q |
213 |
tcaccagaaggattcaaattcctcattgaagttgagctcttaagattaaaaatcctagtttgaacatgcttctcaaacataggattcatcctagtgacca |
312 |
Q |
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| T |
26787183 |
tcaccagaaggattcaaattcctcattgaagttgagctcttaagattaaaaatcctagtttgaacatgcttctcaaacataggattcatcctagtgacca |
26787282 |
T |
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| Q |
313 |
tgttcatcaaaaccatatcaaaaatggcaagcacctcgagaggatacctcaccatcttactatacaattcgtgatcgtgatcaaatacatcacgtgcatc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26787283 |
tgttcatcaaaaccatatcaaaaatggcaagcacctcgagaggatacctcaccatcttactatacaattcgtgatcgtgatcaaacacatcacgtgcatc |
26787382 |
T |
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| Q |
413 |
aacatcaatagactcaccttccaattcaataacctgtttgatcaatttctcatacttcccttcaatatccaaatccatatccaaatcatcat |
504 |
Q |
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| T |
26787383 |
aacatcaatagactcaccttccaattcaataacctgtttgatcaatttctcatacttcccttcaatatccaaatccatatccaaatcatcat |
26787474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 26786973 - 26787113
Alignment:
| Q |
3 |
gagcagagaccacatactagacacctgaatatagcttccctgatttctggtataatcgagctacaccgaataatcattcccttcatcgacaccatcctct |
102 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26786973 |
gagcagaaaccacatactagacacctgaatatagcttccctgatttctggtataatcgagctgcaccgaataatcattcccttcatcgacaccatcctct |
26787072 |
T |
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| Q |
103 |
caatatcttcaaaacaaacatcaagaaacaatcattacata |
143 |
Q |
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| T |
26787073 |
caatatcttcaaaacaaacatcaagaaacaatcattacata |
26787113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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