View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11559_low_5 (Length: 415)
Name: NF11559_low_5
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 3273910 - 3273513
Alignment:
| Q |
17 |
atatataataatgtaggtttatctattgtattcccttaccatcatccctttgaaaaatttgctgggctg----------atgttcatgatcataatcatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
3273910 |
atatataataatgtaggtttatctattgtattcccttaccatc---cctttgaaaaatttgctgtgctgtgctgtgctgatgttcatgatcataatcatc |
3273814 |
T |
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| Q |
107 |
aatgcaatgtcaatatttactatttcattgtaacaannnnnnnnctttcaattttcataaaatacaatgcataattacctatctcaatgataattaacat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3273813 |
aatgcaatgtcaatatttactatttcattgtaacaattttttt-ctttcaattttcataaaatacaatgcataattacctatctcaatgataattaacat |
3273715 |
T |
|
| Q |
207 |
agcttttatttttcaggtgtttattccagtaataatttggcagagagacacattcaccacatcggagttagctatttatgtgtttgcttctatagcacta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3273714 |
agcttttatttttcaggtgtttattccagtaataatttggcagagagacacattcaccacatcggagttagctatttatgtgtttgcttctatagcacta |
3273615 |
T |
|
| Q |
307 |
tttcctaccatatttttaccatcctcaccatcaatgtgggttgctggaatgacatttggttannnnnnnggtttcttcctagtaatgtctgcagcatctg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3273614 |
tttcctaccatatttttaccatcctcaccatcaatgtgggttgctggaatgacatttggttatttttttggtttcttcctagtaatgtctgcagcatctg |
3273515 |
T |
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