View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11559_low_9 (Length: 345)
Name: NF11559_low_9
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 61 - 334
Target Start/End: Complemental strand, 421379 - 421112
Alignment:
| Q |
61 |
atagttatagtgatagtgagagagagagtgtgtgtgataatagacttaatgtacacgccattacattacacactgttttctctgaatcaaatgaaatgag |
160 |
Q |
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| T |
421379 |
atagttatagttatagtgagagagag--tgtgtgtgataatagacttaatgtacacgccattacattacacactgttttctctgaatcaaatgaaatgag |
421282 |
T |
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| Q |
161 |
ttagatagatggatggatagataaagnnnnnnnnnnnncccaaccataacttttcagcaaattaggttagggctatcttattgctatttacacctccaaa |
260 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
421281 |
ttagatagatggatggatagataaagtctctctc----cccaaccataacttttcagcaaattaggttagggctatcttattgctatttacacctccaaa |
421186 |
T |
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| Q |
261 |
aataaagaatgacttttatatattttacttctaataatctcattcttcttgttgcaacgtgattttaatttcat |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
421185 |
aataaagaatgacttttatatattttacttctaataatctcattcttcttgttacaacgtgattttaatttcat |
421112 |
T |
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