View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1155_high_11 (Length: 318)
Name: NF1155_high_11
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 43 - 306
Target Start/End: Complemental strand, 4845798 - 4845535
Alignment:
| Q |
43 |
ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt |
142 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4845798 |
ttggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaattt |
4845699 |
T |
|
| Q |
143 |
gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattgg |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
4845698 |
gaaataataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcg |
4845599 |
T |
|
| Q |
243 |
tttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
4845598 |
tttatgttgttcggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatatt |
4845535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 4816063 - 4815787
Alignment:
| Q |
30 |
cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||| ||| || |||||| |||||||| |
|
|
| T |
4816063 |
cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcag |
4815964 |
T |
|
| Q |
130 |
agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac |
228 |
Q |
| |
|
| ||| ||| |||| | ||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4815963 |
aaccaggtaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac |
4815865 |
T |
|
| Q |
229 |
taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||| |
|
|
| T |
4815864 |
taggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt |
4815787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 4783634 - 4783358
Alignment:
| Q |
30 |
cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||| ||| || || || ||||||||| |
|
|
| T |
4783634 |
cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaa |
4783535 |
T |
|
| Q |
130 |
agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac |
228 |
Q |
| |
|
| ||| ||| |||| | ||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4783534 |
aaccaggtaaattgataagataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac |
4783436 |
T |
|
| Q |
229 |
taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||| |
|
|
| T |
4783435 |
taggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt |
4783358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 4711872 - 4711595
Alignment:
| Q |
29 |
acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||||| |||||| |||||||| |
|
|
| T |
4711872 |
acctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtca |
4711773 |
T |
|
| Q |
129 |
aagccaattaatttgaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac |
228 |
Q |
| |
|
||| ||| | |||| ||| || ||| |||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4711772 |
aagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataat |
4711673 |
T |
|
| Q |
229 |
taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
|||||| | || ||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4711672 |
aaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatatt |
4711595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 306
Target Start/End: Original strand, 4637166 - 4637429
Alignment:
| Q |
43 |
ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||| ||| || || ||| | ||| |
|
|
| T |
4637166 |
ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggttt |
4637265 |
T |
|
| Q |
143 |
gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattgg |
242 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||| ||||| |
|
|
| T |
4637266 |
caaatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattgg |
4637365 |
T |
|
| Q |
243 |
tttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
||| || |||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||| |
|
|
| T |
4637366 |
tttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatatt |
4637429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 306
Target Start/End: Complemental strand, 4696986 - 4696713
Alignment:
| Q |
33 |
gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagc |
132 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| || |||||||| ||| |
|
|
| T |
4696986 |
gtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagt |
4696887 |
T |
|
| Q |
133 |
caattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactag |
231 |
Q |
| |
|
||| | || | |||| ||| ||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
|
|
| T |
4696886 |
caagtgatatcaaatgatattttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataag |
4696788 |
T |
|
| Q |
232 |
gattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
|||| | |||||| ||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
4696787 |
gatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatatt |
4696713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 45 - 295
Target Start/End: Original strand, 4673014 - 4673264
Alignment:
| Q |
45 |
ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga |
144 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| ||||||||||| || ||| |||||| |||||| ||||||| ||| ||| | |||| | |
|
|
| T |
4673014 |
ggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttca |
4673113 |
T |
|
| Q |
145 |
aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt |
243 |
Q |
| |
|
||| ||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||| ||| || |
|
|
| T |
4673114 |
aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgt |
4673212 |
T |
|
| Q |
244 |
ttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttg |
295 |
Q |
| |
|
| || || | ||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
4673213 |
tcatgatgcttggaatgaaatttatgtttagcttctcattgggcttgatttg |
4673264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 4644002 - 4644265
Alignment:
| Q |
29 |
acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| | | ||| |
|
|
| T |
4644002 |
acctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttca |
4644101 |
T |
|
| Q |
129 |
aagccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa |
227 |
Q |
| |
|
||||| ||| |||| | ||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4644102 |
gagccatctaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
| Q |
228 |
ctaggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaata |
304 |
Q |
| |
|
||| ||| || ||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
4644201 |
ctaacatt-----------tgatgt-gggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaata |
4644265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 306
Target Start/End: Original strand, 4864233 - 4864497
Alignment:
| Q |
45 |
ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgta-ttcgctgttgtcaaagccaattaatttg |
143 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| |||| ||||||||||| ||| | |||| |
|
|
| T |
4864233 |
ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcg-tgttgtcaaagtcaagtgatttc |
4864331 |
T |
|
| Q |
144 |
aaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt |
243 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||| |||||| |||| | |
|
|
| T |
4864332 |
aaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgat |
4864431 |
T |
|
| Q |
244 |
ttgtgttgttg---ggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
|| | || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4864432 |
ttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatatt |
4864497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 306
Target Start/End: Original strand, 4653928 - 4654068
Alignment:
| Q |
166 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
265 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
4653928 |
ggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagt |
4654027 |
T |
|
| Q |
266 |
tatgtttagcttctcatttgggttgatttgaatgcaatatt |
306 |
Q |
| |
|
|||||||||||||| ||| || | || ||| |||||||||| |
|
|
| T |
4654028 |
tatgtttagcttcttattcggttggacttggatgcaatatt |
4654068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 4667252 - 4667484
Alignment:
| Q |
45 |
ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga |
144 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||||||| |||||| |||||| | ||| |||| | |||||| || |||||||| ||| |||| | | |
|
|
| T |
4667252 |
ggtggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtca |
4667351 |
T |
|
| Q |
145 |
aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt |
243 |
Q |
| |
|
||| ||||||| ||||| ||| |||||||||||||||||||||| ||||| ||||||| || |||||||| ||||||||| | || ||| ||||||| |
|
|
| T |
4667352 |
aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagcaaa---agcatttaattggt |
4667447 |
T |
|
| Q |
244 |
ttgtgttgttgggaatgaaagttatgtttagcttctc |
280 |
Q |
| |
|
||||||| |||||||||||||||| || ||| ||||| |
|
|
| T |
4667448 |
ttgtgtttttgggaatgaaagttacgtctagtttctc |
4667484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 4631364 - 4631482
Alignment:
| Q |
171 |
gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttg------ttgggaatgaaag |
264 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||| ||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
4631364 |
gtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagctaaacca---tttaattggtttgtgtttgtatttttgggaatgaaag |
4631460 |
T |
|
| Q |
265 |
ttatgtttagcttctcatttgg |
286 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4631461 |
ttatgtttagcttctcatttgg |
4631482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 4653819 - 4653883
Alignment:
| Q |
33 |
gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagcttt |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||| |
|
|
| T |
4653819 |
gtatctaggtttggtggaacttgattttcaccaacgttgacactataaactgtctccagagcttt |
4653883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 4631222 - 4631275
Alignment:
| Q |
29 |
acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaac |
82 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
4631222 |
acctgtatcataatttggtggaacttgattttcaccagcgttgactctataaac |
4631275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 18925525 - 18925344
Alignment:
| Q |
46 |
gtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttgaa |
145 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||| |||| || |||| ||| | | |||| ||||| |||| |||| ||||| ||| || || |
|
|
| T |
18925525 |
gtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaa |
18925426 |
T |
|
| Q |
146 |
ataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa |
227 |
Q |
| |
|
|| || |||| ||||| |||||||||||||||||||||||||||| ||||| | || |||||||| |||||||||||| |
|
|
| T |
18925425 |
atgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa |
18925344 |
T |
|
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