View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_high_19 (Length: 228)
Name: NF1155_high_19
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18437969 - 18438185
Alignment:
| Q |
1 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18437969 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
18438068 |
T |
|
| Q |
101 |
actcttctctttgtagatcttcttttttctgcaattattcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
18438069 |
actcttctctttgtagatcttcttttttctgccattattcaattttatttcgcagtaaaagttgaataaaaaactgatcaattgatgaagatagaaataa |
18438168 |
T |
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| Q |
201 |
atggacattaaagtata |
217 |
Q |
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||||||||||||||||| |
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| T |
18438169 |
atggacattaaagtata |
18438185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18442246 - 18442459
Alignment:
| Q |
1 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18442246 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
18442345 |
T |
|
| Q |
101 |
actcttctctttgtagatcttcttttttctgcaattattcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| |
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| T |
18442346 |
actcttctctttgtagatcttcttttttctgccattattcaattttatttcgcagtaaaagttgaataaaaaactaatcaattgatgaagacagaaataa |
18442445 |
T |
|
| Q |
201 |
atggacattaaagt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
18442446 |
atggacattaaagt |
18442459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 18433690 - 18433902
Alignment:
| Q |
1 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18433690 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccattattgaaactatctttttcatctcatagtttgccata |
18433789 |
T |
|
| Q |
101 |
actcttctctttgtagatcttcttttttctgcaattattcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |||||| ||| |||||| |||||| |
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| T |
18433790 |
actcttctctttgtagatcttcttttttctgccattattcaattttatttcgcaataaaagttgaataaaaaacttatcaatagattaagataaaaataa |
18433889 |
T |
|
| Q |
201 |
atggacattaaag |
213 |
Q |
| |
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||||| ||||||| |
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| T |
18433890 |
atggatattaaag |
18433902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 18447375 - 18447554
Alignment:
| Q |
1 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18447375 |
gggtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattattatcaccaatattgaaactatctttttcatctcatagtttgccata |
18447474 |
T |
|
| Q |
101 |
actcttctctttgtagatcttcttttttctgcaattattcaattttatttcgcagtaaaagtagaagaaaaaactgatca |
180 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18447475 |
actcttctctttgtagatcttgttttttctgccattattcaattttatttcgcagtaaaagttgaagaaaaaactgatca |
18447554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 20945507 - 20945596
Alignment:
| Q |
23 |
gaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctcttt |
112 |
Q |
| |
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||||||||| |||| |||||||| || |||||||||| ||| |||| || |||||||||||||| | |||||||||||||||| |||| |
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| T |
20945507 |
gaatcatcaacttgtgcaacaactaagattatcatcatcaaaattgtcacattctttttcatctcacactttgccataactcttcacttt |
20945596 |
T |
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