View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1155_low_1 (Length: 591)
Name: NF1155_low_1
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 82 - 496
Target Start/End: Original strand, 43404007 - 43404423
Alignment:
| Q |
82 |
gcagagagtgagggtgagtaatagaacaaatctttttataatactactatgcatttctttatctaatatcactcatttagttgagacctattttaatann |
181 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43404007 |
gcagtgagtgagagtgagtgatagaacaaatctttttataatactactatgcatttctttatctaatatcactcatttagttgagacctattttaatatt |
43404106 |
T |
|
| Q |
182 |
nnnnnngttgggggttaaaatttacctttttaagttgaaactttaatctgtactaactttttggaatccaaggttgctttatttatgtatactatattca |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43404107 |
ttttttgttgggggttaaaatttacctttttaagttgaaactttaatctgtactaactttttggaatccaaggttgctttatttatgtatactatattca |
43404206 |
T |
|
| Q |
282 |
aaagtggttacttccaggcagtttgatgcagagaagccatttttcatcagatttggtgtatagattttcacaaatttaggaatc--atttattcataaca |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43404207 |
aaagtggttacttccaggcagtttgatgcagagaagccatttttcatcagatttggtgtatagattttcacaaatttaggaatcatatttattcataaca |
43404306 |
T |
|
| Q |
380 |
tcacatgatatggtcaaaaataaccggtcaaaactgttagggaaaaaatatcaactgtagttgtgagggttagctttccaatgctaggtgccatcatatt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43404307 |
tcacatgatatggtcaaaaataaccggtcaaaactgttagggaaaaaatatcaactgtagttgtgagggttagctttccaatgctaggtgccatcatatt |
43404406 |
T |
|
| Q |
480 |
ttcctccttgtttgaaa |
496 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43404407 |
ttcctccttgtttgaaa |
43404423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University