View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_11 (Length: 385)
Name: NF1155_low_11
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 43620603 - 43620245
Alignment:
| Q |
30 |
attaagatgtttaaaaagtaaggatcccatgaagcaatcaatatatatatcatcttgttaaataggatgtctaatagagcaagtttag-tagctttttca |
128 |
Q |
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| T |
43620603 |
attaagatgtttaaaaagaaaggatctcatgaagcattatat-tatatatcaccttgttaaataggatgcctaatagagcaagttcagatagctttgtca |
43620505 |
T |
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| Q |
129 |
atatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcc |
228 |
Q |
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| T |
43620504 |
atatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcc |
43620405 |
T |
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| Q |
229 |
cagtttgtgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccag |
325 |
Q |
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| T |
43620404 |
cagtttgtgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccag |
43620305 |
T |
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| Q |
326 |
tctcccagccagagtgacatcgattatcaactacatttgactgcgattccccacaacata |
385 |
Q |
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| T |
43620304 |
tctcccagccagagtgacatcgattatcaactacatttgactgcgattctccacaacata |
43620245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 43627126 - 43627035
Alignment:
| Q |
135 |
gcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
226 |
Q |
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| T |
43627126 |
gcatcatcgaaaattatgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 32407410 - 32407515
Alignment:
| Q |
105 |
agagcaagtttagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttag |
204 |
Q |
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| T |
32407410 |
agagcaagttcagcagctttattaacatcagcatcatcaaaaattaagaggggtgattttcctcctaattcaagtgaaactggtttcaaattacttctag |
32407509 |
T |
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| Q |
205 |
ctgcag |
210 |
Q |
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|||||| |
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| T |
32407510 |
ctgcag |
32407515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 32434411 - 32434311
Alignment:
| Q |
119 |
agctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcatt |
218 |
Q |
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|||||| |||| |||||||||||| || |||| | || ||||||||||||||||||||||| || | ||||| |||||| |||||||| |||||| |
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| T |
32434411 |
agctttatcaacatcagcatcatcgaaaattaaaacaggcgacttgcctcctaattcaagtgataccggcttcaaattactcaatgctgcagcctgcatt |
32434312 |
T |
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| Q |
219 |
a |
219 |
Q |
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| T |
32434311 |
a |
32434311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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