View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_13 (Length: 363)
Name: NF1155_low_13
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 35710175 - 35709839
Alignment:
| Q |
19 |
cttgatgctattggagctgagattggcgagacatctataaccaaaccagtaaaaatggtttgtgtgaaggttgagccgaatgaaggaaaatgatgttcca |
118 |
Q |
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| T |
35710175 |
cttgatgctattggagctgagattggcgagacatctataaccaaaccagtaaaaatggtttgtgtgaagggtgagccgaatgaaggaaaatgatgttcca |
35710076 |
T |
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| Q |
119 |
tcnnnnnnnnnnnnnnnnnggtggtgaaataatgttccatctgttgttccttt------tcattcaagtgtttttaattatgtattttggcttattgttg |
212 |
Q |
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| T |
35710075 |
tctttttttttttttttttggttgtgaaataatgttccatctgttgttcctttcaagcttaagtcaagtgtttttaattatgtattttggcttattgttg |
35709976 |
T |
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| Q |
213 |
tacgctgcgttgtcatttttgttgtcgcaagcttagctgtctaatgatgtgggcaattcgaaccaagaccttattcaatcccaatgctgnnnnnnnnnnn |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35709975 |
tacgctgcgttgtcatttttgttgtcgcaaacttagctgtctaatgatatgggcaattcgaaccaagaccttattcaatcccaatgctg---tttttttc |
35709879 |
T |
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| Q |
313 |
gttatatcatggtcaacagttctatatattattatcctttg |
353 |
Q |
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| T |
35709878 |
gttatatcatggtcaacagttctatatatta-tatcctttg |
35709839 |
T |
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