View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_17 (Length: 322)
Name: NF1155_low_17
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_17 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6139458 - 6139231
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139458 |
aatgaaaaacaaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
6139359 |
T |
|
| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139358 |
aaatgcggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
6139259 |
T |
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| Q |
201 |
cgatctaggaggaggtggaggaggattt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6139258 |
cgatctaggaggaggtggaggaggattt |
6139231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 6152315 - 6152228
Alignment:
| Q |
22 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
6152315 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggt |
6152228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 6126712 - 6126633
Alignment:
| Q |
23 |
caagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaa |
102 |
Q |
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| T |
6126712 |
caagtaactaagaaagtatatatacctcaaccatgagcatgttcctctctagcctaagttcatgagaagttgaaatgaaa |
6126633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6146128 - 6146042
Alignment:
| Q |
23 |
caagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
109 |
Q |
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||||||| | ||||||||||| ||||||| ||||| | |||||||||| ||||||||||| |||||||||||| ||| |||||| |
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| T |
6146128 |
caagtaacttagaaagtatatgtacctcaaccctgtgcctgttcctctctggcctaagttcatgagaagttgaaattaaattgtggt |
6146042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25364255 - 25364029
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25364255 |
aatgaacaaccaaaaataatcacaagtaattaagaaagcatatatacctcatccatgagagcgttcctctcttccctaagttcatcagaagttgaaatga |
25364156 |
T |
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| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
200 |
Q |
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||||| ||||||||||||||| | ||| |||||||||||||||||| |||||||||||| |||||||| |||| |||||||| |||||| |||||||| |
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| T |
25364155 |
aaatgcggttattaccgccagaaagagctggattctctgatcttgccaatgttgaattgttctgcatg-actcgccagtttgaaaaacagtactaaacct |
25364057 |
T |
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| Q |
201 |
cgatctaggaggaggtggaggaggattt |
228 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
25364056 |
cgatctaggaggaggtggagggggattt |
25364029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7816 - 8043
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
7816 |
aatgaacaaccaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatga |
7915 |
T |
|
| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagttt-gttcaacagtgctaaacc |
199 |
Q |
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||||| | |||||||| |||||||||| |||||||||||||||||| |||||||||||| | |||||| |||| ||||||| |||||| ||||| | |
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| T |
7916 |
aaatgcgcttattaccaccaggacgagctggattctctgatcttgccaatgttgaattgttttgcatg-actcgccagtttaaaaaaacagtactaaagc |
8014 |
T |
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| Q |
200 |
tcgatctaggaggaggtggaggaggattt |
228 |
Q |
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|||| ||||||||||||||||| |||||| |
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| T |
8015 |
tcgacctaggaggaggtggagggggattt |
8043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 18397 - 18642
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
18397 |
aatgaacaaccaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatga |
18496 |
T |
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| Q |
101 |
aaatg------------------tggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagttt- |
181 |
Q |
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||||| | |||||||| |||||||||| |||||||||||||||||| |||||||||||| | |||||| |||| ||||||| |
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| T |
18497 |
aaatgcgcttattaccaccaggacgcttattaccaccaggacgagctggattctctgatcttgccaatgttgaattgttttgcatg-actcgccagttta |
18595 |
T |
|
| Q |
182 |
gttcaacagtgctaaacctcgatctaggaggaggtggaggaggattt |
228 |
Q |
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| T |
18596 |
aaaaaacagtactaaacctcgatctaggaggaggtggagggggattt |
18642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 7917821 - 7917897
Alignment:
| Q |
94 |
gaaatgaaaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgta |
170 |
Q |
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||||||||||| | |||||||||||||| ||||| |||||||||||| ||||| |||||||||| || |||||||| |
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| T |
7917821 |
gaaatgaaaatatcgttattaccgccagcacgagctggattctctgaacttgccaatgttgaatcagtttgcatgta |
7917897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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