View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_2 (Length: 585)
Name: NF1155_low_2
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_2 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 218 - 556
Target Start/End: Original strand, 20051264 - 20051615
Alignment:
| Q |
218 |
gttgaacttactaatttcgtggcttcaacggatacattaagtaaagaaggaactccagtgcactcgaaggaatagtcgacacccattccaccacttagtt |
317 |
Q |
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| T |
20051264 |
gttgaacttactaatttcgtggcttcaacggatacattaagtaaagaaggaactccagtgcactcgaaggaataatcgacacccattccaccacttagtt |
20051363 |
T |
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| Q |
318 |
ctttaaccaaatcagaagcagacttatatgaaccactcggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttatc |
417 |
Q |
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| T |
20051364 |
ctttaaccaaatcagaagcagacttatatgaaccacttggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttatc |
20051463 |
T |
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| Q |
418 |
aaccccaattattttacttgctcccatcattttggctccacctatgacctg-------------cactctcatcatataatcnnnnnnnttaatcgaaga |
504 |
Q |
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| T |
20051464 |
aaccccaattattttacttgctcccatcattttggctccacctatgacctgcaccacaaggtctcactctcgtcatataatcaaaaaaattaatcgaaga |
20051563 |
T |
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| Q |
505 |
aaaaactaaaacaataaacgtagttttaaattgcaatccacaaccataatta |
556 |
Q |
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| T |
20051564 |
aaaaactaaaacaaaaaacgtagttttaaattgcaatccacaaccataatta |
20051615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 20051030 - 20051233
Alignment:
| Q |
13 |
aatattgatgaacaacaaggacgaggaagaacatcaaccgtgttagagaaatgcattctctctagttatagctaaatgttattccagacatattatacaa |
112 |
Q |
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| T |
20051030 |
aatatttatgaacaacaaggacggggaagaacatcaaccgtgttagagaaatgcattctctctagttatagttaaatgttattccagacatactatacaa |
20051129 |
T |
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| Q |
113 |
cgtaaaaatcgaagatgttgttaacaagcgaacaaaccaatatcataagatgaagcataacatatcagaaaaattaaccatgtgatcaagatttattcga |
212 |
Q |
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| T |
20051130 |
cgtaaaaatcgaagatgttgttatcaagcgaacaaaccaatatcataagatgaagcataacatatcacacaaattaaccatgtgatcaagatttattcga |
20051229 |
T |
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| Q |
213 |
ctca |
216 |
Q |
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|||| |
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| T |
20051230 |
ctca |
20051233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 317 - 447
Target Start/End: Original strand, 505381 - 505511
Alignment:
| Q |
317 |
tctttaaccaaatcagaagcagacttatatgaaccactcggatttataaagtgggtcattccgaaagcttctcctttttctctcttcatctcatttttat |
416 |
Q |
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||||||||||| || |||||||| |||| ||| || | | ||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |
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| T |
505381 |
tctttaaccaattctgaagcagatttatcagaatcattagaatttataaaatgggtcatcccaaaagcttctcctttttctctcttcatctcgtttttgt |
505480 |
T |
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| Q |
417 |
caaccccaattattttacttgctcccatcat |
447 |
Q |
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| T |
505481 |
caaccccaattatcttacttgctcccatcat |
505511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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