View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_3 (Length: 584)
Name: NF1155_low_3
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 253 - 576
Target Start/End: Complemental strand, 54950424 - 54950101
Alignment:
| Q |
253 |
tacaattgtgtttagtgctgctacgtgaattttcccatatatacgattctgcattgttgcgtttaaatgttcatgatttacttcataattcgcgttatag |
352 |
Q |
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| T |
54950424 |
tacaattgtgttttgtgctgctacgtgaattttcccatatatacgattctgcattgttgcgtttaaatgttcatgatttactgcataattcgcgttatag |
54950325 |
T |
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| Q |
353 |
gttggtttataagtgtatctggtttatgcatttctgcatagctacgattttctgcgctattacgagtgtggtcaagtctactatgtcgtcgcttactgat |
452 |
Q |
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| T |
54950324 |
gttggtttataagtgtatctggtttatgcatttctgcatagctacgattttctgcgctattacgagtgtggtcaagtctactatgtcgtcgcttgctgat |
54950225 |
T |
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| Q |
453 |
gtgttcttcagtttcatttatgtaccataaattttgtagggctttctaattggattctgattctacataatgttatttggattgatgtttactctatcgt |
552 |
Q |
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| T |
54950224 |
gtgttcttcagtttcatttatgtaccataaattttgtagagctttctaattggattctgattctacataatgttatttggattgatgtttactctatcgt |
54950125 |
T |
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| Q |
553 |
acaattttgtcctcaatattattc |
576 |
Q |
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| T |
54950124 |
acaattttgtcctcaatattattc |
54950101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 54950590 - 54950491
Alignment:
| Q |
87 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
186 |
Q |
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| T |
54950590 |
attctttgattgatagtgatacatccattcttttctaaagatgcatgtcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
54950491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 54951140 - 54951085
Alignment:
| Q |
36 |
attttaagtaatgtttgaatttataactcgtaattttttacattttctttcattctt |
92 |
Q |
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| T |
54951140 |
attttaagtaatgtttgaatttataactc-taattttttacattttctttcattctt |
54951085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 54944869 - 54944793
Alignment:
| Q |
87 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatca |
163 |
Q |
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| T |
54944869 |
attctttgattgatagtgatgaagccactcttttgtaaagatgcatgtcatcgtttttgggcagaattccataatca |
54944793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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