View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_33 (Length: 223)
Name: NF1155_low_33
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 34819791 - 34819991
Alignment:
| Q |
21 |
gttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataactcttccctttcttctttaaa |
120 |
Q |
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| T |
34819791 |
gttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatcactcttccctttcttctttaaa |
34819890 |
T |
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| Q |
121 |
ggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaacttccag |
220 |
Q |
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| T |
34819891 |
ggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatactctcgtcaacaaaactcccag |
34819990 |
T |
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| Q |
221 |
c |
221 |
Q |
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| T |
34819991 |
c |
34819991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 34820119 - 34820261
Alignment:
| Q |
73 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcat |
172 |
Q |
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| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatg |
34820218 |
T |
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| Q |
173 |
acataccaacatcatttttggtgatactctcgtcaataaaact |
215 |
Q |
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| T |
34820219 |
acgtaccaacattattttttgtgatgctctcgtcaacaaaact |
34820261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
| Q |
133 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
215 |
Q |
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| T |
34820530 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact |
34820612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
| Q |
133 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac |
214 |
Q |
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| T |
34820296 |
gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
34820377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
| Q |
139 |
tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
215 |
Q |
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| T |
34820653 |
tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact |
34820729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
| Q |
176 |
taccaacatcatttttggtgatactctcgtcaataaaact |
215 |
Q |
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| T |
34820807 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
34820846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
| Q |
133 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
215 |
Q |
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| T |
34820413 |
gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
34820495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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