View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_35 (Length: 213)
Name: NF1155_low_35
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 39897873 - 39897762
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
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| T |
39897873 |
ttctttacatgttttcatttcttgtaatttgttaaaccacaagtttgtgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
39897774 |
T |
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| Q |
112 |
ttagctattgat |
123 |
Q |
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|||||||||||| |
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| T |
39897773 |
ttagctattgat |
39897762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 39874757 - 39874650
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||| ||||||| |||| |||| ||||| |
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| T |
39874757 |
ttctttatatgttttcatttctcgtaatttgttaaaccgcaagtttgtgccctttcctaaccattttcaattatgtgtttctgatattcataaggtatgg |
39874658 |
T |
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| Q |
112 |
ttagctat |
119 |
Q |
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|||||||| |
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| T |
39874657 |
ttagctat |
39874650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 39882885 - 39882774
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||||| ||||||| ||||| |||| | ||||| ||||| | |||||||||||| ||| ||||| |
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| T |
39882885 |
ttctgtacatgtttttatttctcataatttgttaaactgcaagtttgtgtccactcctgagcatttaaaattgtttgtttctgctattagtatagtatgg |
39882786 |
T |
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| Q |
112 |
ttagctattgat |
123 |
Q |
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|||| ||||||| |
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| T |
39882785 |
ttagttattgat |
39882774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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