View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_5 (Length: 477)
Name: NF1155_low_5
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 123 - 350
Target Start/End: Original strand, 48667498 - 48667725
Alignment:
| Q |
123 |
cagagaacaaggccgacataacacatgagagatcttcttagaattcttagatagaagacatgtgaatggagctttccttcccaagtctgatagagttgac |
222 |
Q |
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| T |
48667498 |
cagagaacaaggccgacataacacatgagagatcttcttagaattcttagatagaagacatgtgaatggagctttccttcccaagtctgatagagttgac |
48667597 |
T |
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| Q |
223 |
ataatctgtgggacaatgagccgaaaaaccaggaagtgccagtccaattattcttaccagtatgcgaaaccacccttccttatactctgctccttcaacg |
322 |
Q |
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| T |
48667598 |
ataatctgtgggacaatgagccgaaaaaccaggaagtgccagtccaattattcttaccagtatgcgaaaccacccttccttatactctgctccttcaacg |
48667697 |
T |
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| Q |
323 |
taacccattgtcaagcctcgaactaact |
350 |
Q |
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| T |
48667698 |
taacccattgtcaagcctcgaactaact |
48667725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 8600229 - 8600339
Alignment:
| Q |
207 |
gtctgatagagttgacataatctgtgggacaatgagccgaaaaaccaggaagtgccagtccaattattcttaccagtatgcgaaaccacccttccttata |
306 |
Q |
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| T |
8600229 |
gtctgataaagttgacataatctgtgggacaatgagccgaaaaaccaggaagtaacagtcctattatccttaccaatatgcgaaaccacccttccttata |
8600328 |
T |
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| Q |
307 |
ctctgctcctt |
317 |
Q |
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| T |
8600329 |
ctctgctcctt |
8600339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7303513 - 7303475
Alignment:
| Q |
1 |
atgcttgatgaaatcacttgctgatttggatattgtttt |
39 |
Q |
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| T |
7303513 |
atgcttgatgaaatcacttgctgatttggatattgtttt |
7303475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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