View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1155_low_6 (Length: 469)
Name: NF1155_low_6
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_6 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 179 - 469
Target Start/End: Complemental strand, 26678986 - 26678696
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26678986 |
cctatcgtacgatcattgataggacgcctcccactaatattgtttcagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtttttgcttg |
26678887 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678886 |
gcgtctttttcggcatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
26678787 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678786 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
26678696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 10290033 - 10290327
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10290033 |
cctatcgtacgatcattgataggacgcctcccactaataatgttctagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtgtttgcttg |
10290132 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10290133 |
gcgtctttttcggcatagatttccttctaaaacaaatctgtttcgtcgaggcattattcctcctgaggctcaaccatgtattagtggttgcggtcaacag |
10290232 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagc----ttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
10290233 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttaattattcagaattggcttggtgtttattctgcggatc |
10290327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 16315823 - 16315938
Alignment:
| Q |
238 |
tggagaaaggatgtcccggtgaaggtgtcggtatttgcttggcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattc |
337 |
Q |
| |
|
||||| ||||| || ||| ||||||| || | ||||||||| ||||||| ||| |||| ||||| |||| ||||||||||||| | ||||||||||| |
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|
| T |
16315823 |
tggaggaaggacgttccgttgaaggtttccatgtttgcttggtgtcttttccggaataggttgcccactaagacaaatctgtttcttagaggcattatta |
16315922 |
T |
|
| Q |
338 |
cttctgaggctcaact |
353 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
16315923 |
cttctaagactcaact |
16315938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 420
Target Start/End: Original strand, 32991527 - 32991712
Alignment:
| Q |
235 |
ttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttggcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcatta |
334 |
Q |
| |
|
|||||||| ||| ||||||| ||||||| || || || |||||| | |||||||| | | ||||| |||| |||||||| || || ||| ||||| |
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|
| T |
32991527 |
ttatggaggaagaatgtccctttgaaggtttccgtgttcgcttggaggctttttcgaaacgggttgcccactaagacaaatctattccggagagacatta |
32991626 |
T |
|
| Q |
335 |
ttccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctttttggt |
420 |
Q |
| |
|
|| || ||||||||||| | ||| || |||||| || |||||||| || |||| ||||| ||||| |||||| ||||||||||| |
|
|
| T |
32991627 |
tttctcctgaggctcaattgtgtgtttctggttgtggacaacaggaatcggagatccatttatttttgtcttgtcctctttttggt |
32991712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 5278128 - 5278418
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5278128 |
cctatcgtacgatcattgataggacgcctcccactaatattgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtttttccttg |
5278227 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278228 |
gcgtctttttcggcatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
5278327 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278328 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
5278418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 179 - 461
Target Start/End: Original strand, 30650834 - 30651116
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
||||||||| ||||| |||||| |||||| ||||||||||||| || |||||||| |||||||||||||||||| | |||||||||| || |||||||| |
|
|
| T |
30650834 |
cctatcgtatgatcactgataggacgcctaccactaataatgtacctgcggctcttttatggagaaaggatgtctcattgaaggtgtcagtgtttgcttg |
30650933 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | ||| ||||||| | | ||||| |||| ||| |||||| | || ||| ||||||| |||||||||||| |
|
|
| T |
30650934 |
acgtctttttcggcatagattgcctactaagataaacctgtttctttgtggcataattcattccgaggcttagctttgtgttagtgggtgcggtcaacag |
30651033 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||| |||| ||| |||||||||| |
|
|
| T |
30651034 |
gagtcggagactcatttgtttttatcttgtacttttttttatcagatttggcagtttattcgaaattagctcagtgtttattc |
30651116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 461
Target Start/End: Complemental strand, 5182393 - 5182247
Alignment:
| Q |
315 |
tctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctt |
414 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||| || ||| ||||||||||| |||| ||||| || ||||||| ||| |||||| | ||| || |
|
|
| T |
5182393 |
tctgttccgtagaagcattattccttctgaggctctgctgtgtgttagtggttgcagtcatcaggaatcagagactcgtttatttttaacatgtcgacta |
5182294 |
T |
|
| Q |
415 |
tttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
|||||||| ||||| |||||| || |||| |||||| ||||| |||| |
|
|
| T |
5182293 |
tttggtcagatttgacagcttgttaggaactggctttgtgttcattc |
5182247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 461
Target Start/End: Original strand, 12656785 - 12656835
Alignment:
| Q |
411 |
tctttttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| || |||| ||||| |
|
|
| T |
12656785 |
tctttttggtcatatttggcagcttgttaggaattggatttgtgtatattc |
12656835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 5696323 - 5696613
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5696323 |
cctatcgtacgatcattgataggacgcctcccactaatattgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtttttgcttg |
5696422 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696423 |
gcgtctttttcggcatagattgccttttaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
5696522 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5696523 |
gagtccgagactcatttgtttttatcttgtactctttttgttcatatttggcatcttattcggaattggcttggtgtttattatgcggatc |
5696613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 25036171 - 25036461
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25036171 |
cctatcttacgatcattgataggacacctcccactaataatgttctagcggctctcttatggagaaaggatgtcccgatgaaggtgtcggtgtttgcttg |
25036270 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036271 |
gcgtctttttcggcatagattgccttctaaaacaaatttgtttcgtcgaggtattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
25036370 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036371 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttagcagcttattcggaattggcttggtgtttattctgcggatc |
25036461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 185 - 469
Target Start/End: Complemental strand, 6018234 - 6017950
Alignment:
| Q |
185 |
gtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttggcgtct |
284 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6018234 |
gtacgatcattgataggacgcctcccactaatactgttccaacggctctcttatggagaaaggatgttccggtgaaggtgtcggtatttgcttggcgtct |
6018135 |
T |
|
| Q |
285 |
ttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtcc |
384 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
6018134 |
ttttcggcatagattgccttctaaaacaaatctgtttcgttgaggcattattccttctgaggctcaactatgtattggtggttacggtcaataggagtcc |
6018035 |
T |
|
| Q |
385 |
gagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6018034 |
gagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
6017950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 179 - 461
Target Start/End: Original strand, 34792665 - 34792947
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
34792665 |
cctatcgtatgatcactgataggacgcctcccactaataatgtacatgcgtctctcttatggagaaaggatgtcccactgaaggtgtcggtgttcgcttg |
34792764 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
|| |||||||||| ||||||||| | |||| | ||| |||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
34792765 |
gcatctttttcggcatagattgcatactaagataaacttgtttcgtcgtggtattattccttctgaggctcaactttgtgttagtgggtgcggtcaacag |
34792864 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34792865 |
gagtcagagactcatttgtttttatcttgtactatttttggtcagatttggcagtttattcggaattggcttggtgtttattc |
34792947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 49125123 - 49125196
Alignment:
| Q |
97 |
atattctctagtagaatatgattaataaaaatgaacgagagaacatatcatataatatataattcaaagctaataa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49125123 |
atattctctagtagaatatgattaataaaaatgaacgagagaacatatcatata--atataattcaaagctaataa |
49125196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 461
Target Start/End: Original strand, 3743679 - 3743755
Alignment:
| Q |
385 |
gagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||| |||||||||||| || ||| ||||||||| ||| |||| |
|
|
| T |
3743679 |
gagactcgtttgtttttgtcttgtagcctttttggtcagatttggcagcttgttaggacttggcttggagttcattc |
3743755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 4372437 - 4372727
Alignment:
| Q |
179 |
cctatcgtacgatcattgatagaacgcctcccactaataatgttccagcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttg |
278 |
Q |
| |
|
||||| ||||| ||| | ||||||| |||||||||||| |||| || ||| | |||||||||||| ||||||||| | ||||||| ||||| ||||||| |
|
|
| T |
4372437 |
cctatggtacgctcactaatagaacacctcccactaatcatgtacctgcgacactcttatggagacaggatgtcctgttgaaggtatcggtgtttgcttt |
4372536 |
T |
|
| Q |
279 |
gcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacag |
378 |
Q |
| |
|
||||||||||||| || |||||||| |||| |||| |||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||| || |
|
|
| T |
4372537 |
gcgtctttttcggcatggattgcctactaagacaagtctgtttcgtcgtgacattattccttctgaggctcaactgtgtgttagtggttgcggtcaatag |
4372636 |
T |
|
| Q |
379 |
gagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
4372637 |
gagtcggagactcatttgtttttatcttgtactctttttggtcagatctggcagcttattcggaattggttttgtgtttattccgcggatc |
4372727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 225 - 447
Target Start/End: Original strand, 12715706 - 12715928
Alignment:
| Q |
225 |
agcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttggcgtctttttcggtatagattgccttctaaaacaaatctgtttcgt |
324 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||| || | ||||||| |||||| |||||| ||||| || |
|
|
| T |
12715706 |
agcggctctcttatggagaaaggatgttccgttgaaggtgtcggtgtttgtttggcgtctttttaggcacagattgcgttctaagacaaatatgttttgt |
12715805 |
T |
|
| Q |
325 |
cgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctttttggtcata |
424 |
Q |
| |
|
|| ||||||||||||| |||| || || ||| | | |||||| ||||| |||||||| |||||||| |||||||||||| ||| | |||| | || | |
|
|
| T |
12715806 |
cgtggcattattcctttagaggaccagctgtgtgtcattggttgtggtcatcaggagtcggagactcacttgtttttatctcgtaattttttcgtccaga |
12715905 |
T |
|
| Q |
425 |
tttggcagcttattcggaattgg |
447 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
12715906 |
gttgacagcttattcggaattgg |
12715928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 11773533 - 11773616
Alignment:
| Q |
226 |
gcggctctcttatggagaaaggatgtcccggtgaaggtgtcggtatttgcttggcgtctttttcggtatagattgccttctaaa |
309 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||| || | |||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
11773533 |
gcggctctcccatggaggaaggatgtcccattgaaggtctcaatgtttgcttgttgtctttttcggaatagattgccatctaaa |
11773616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 41996383 - 41996427
Alignment:
| Q |
413 |
tttttggtcatatttggcagcttattcggaattggcttggtgttt |
457 |
Q |
| |
|
|||||||||| |||||||| ||| |||| |||||||||||||||| |
|
|
| T |
41996383 |
tttttggtcaaatttggcaacttgttcgtaattggcttggtgttt |
41996427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 329 - 469
Target Start/End: Complemental strand, 20848535 - 20848395
Alignment:
| Q |
329 |
gcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctttttggtcatatttg |
428 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848535 |
gcattattccttctgaggctcaactttgtattagtggttgcggtcaacaggagtccgagactcatttgtttttatcttgtactctttttggtcatatttg |
20848436 |
T |
|
| Q |
429 |
gcagcttattcggaattggcttggtgtttattctgcggatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848435 |
gcagcttattcggaattggcttggtgtttattctgcggatc |
20848395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 408
Target Start/End: Complemental strand, 7516743 - 7516606
Alignment:
| Q |
271 |
tttgcttggcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcg |
370 |
Q |
| |
|
|||||||| |||||||| || ||| ||||| ||||| ||||||||||| ||| ||| ||||||| ||| |||||||||||| ||| || |||||| | |
|
|
| T |
7516743 |
tttgcttgacgtcttttctggaatatgttgccctctaacacaaatctgttccgtagagacattattacttatgaggctcaactgtgtgtttctggttgtg |
7516644 |
T |
|
| Q |
371 |
gtcaacaggagtccgagactcatttgtttttatcttgt |
408 |
Q |
| |
|
| |||||||| || |||||||| || ||||| |||||| |
|
|
| T |
7516643 |
ggcaacaggaatcagagactcacttatttttgtcttgt |
7516606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 461
Target Start/End: Original strand, 9781615 - 9781805
Alignment:
| Q |
271 |
tttgcttggcgtctttttcggtatagattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcg |
370 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||| || ||||| ||||||||| ||||||||||||| | |||||||| | ||| || ||| ||| |
|
|
| T |
9781615 |
tttgcttggcgtctttttcagaataggttgccttccaagacaaacctgtttcgtagaggcattattcccttcgaggctcagatgtgtgtttctggctgca |
9781714 |
T |
|
| Q |
371 |
gtcaacaggagtccgagactcatttgtttttatcttgtactctttttggtcatatttggcagcttattcggaattggcttggtgtttattc |
461 |
Q |
| |
|
|||||||||| | |||| ||| | |||||||||||| || |||||||||| | |||||| | || | || ||||||||||||||||| |
|
|
| T |
9781715 |
gtcaacaggaatttgagaaccatgtatttttatcttgtcctttttttggtcagttatggcagttggttagaaactggcttggtgtttattc |
9781805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 450
Target Start/End: Original strand, 23409388 - 23409542
Alignment:
| Q |
296 |
gattgccttctaaaacaaatctgtttcgtcgaggcattattccttctgaggctcaactatgtattagtggttgcggtcaacaggagtccgagactcattt |
395 |
Q |
| |
|
||||||| ||||| ||||| | |||||| |||| |||||||||| ||||||||| | ||| |||||||||| ||| ||||||| || |||| |||||| |
|
|
| T |
23409388 |
gattgccatctaagtcaaatttatttcgtagaggaattattccttatgaggctcagttgtgtgttagtggttgtggttaacaggaatcggagaatcattt |
23409487 |
T |
|
| Q |
396 |
gtttttatcttgtactctttttggtcatatttggcagcttattcggaattggctt |
450 |
Q |
| |
|
||| | || |||| | |||||||||| |||||||||| || ||||||||||| |
|
|
| T |
23409488 |
atttgtgtcatgtaatatttttggtcaaatttggcagccggtttggaattggctt |
23409542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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