View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_7 (Length: 444)
Name: NF1155_low_7
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 435
Target Start/End: Original strand, 7883675 - 7884080
Alignment:
| Q |
29 |
ggtcctaaagtttgggctgctggctggcaaacagctgtgtctcaaattggtccgaattttgtctggtaagcacaaaactctacgaatttacgtgtcagct |
128 |
Q |
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| T |
7883675 |
ggtcctaaagtttgggttgcaggctggcaaacagctgtgtctcaaattggtccgaattttgtctggtaagcacaa---tctacgaatttacgtgtcagct |
7883771 |
T |
|
| Q |
129 |
tagtgataaaagtttgatttttgttaagtgatatacta---gttcaaatttattcggaaacgctttaatttgataatgatttgannnnnnnnnnatgttt |
225 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
7883772 |
cagtgataaaagtttgatttt-gttaagtgatatactactagttcaaatttattccgaaacgctttaatttgataatgatttgaatttttttttatgttt |
7883870 |
T |
|
| Q |
226 |
ataggtgggtggttgctcaaagtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883871 |
ataggtgggtggttgctcaaagtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaa |
7883970 |
T |
|
| Q |
326 |
tacaatgaagagaatttctgtaatagtctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgcaattcttggc |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7883971 |
tacaatgaagagaatttctgtaatagtctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgcaattcttggc |
7884070 |
T |
|
| Q |
426 |
accttcatct |
435 |
Q |
| |
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|||||||||| |
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| T |
7884071 |
accttcatct |
7884080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 246 - 431
Target Start/End: Original strand, 54986568 - 54986753
Alignment:
| Q |
246 |
agtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaatacaatgaagagaatttctg |
345 |
Q |
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||||||||||| || || || |||||||| || || |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| || | |
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| T |
54986568 |
agtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcgg |
54986667 |
T |
|
| Q |
346 |
taatagtctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgcaattcttggcaccttc |
431 |
Q |
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| T |
54986668 |
ttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttc |
54986753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 54986176 - 54986236
Alignment:
| Q |
41 |
tgggctgctggctggcaaacagctgtgtctc-aaattggtccgaattttgtctggtaagca |
100 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||| |
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| T |
54986176 |
tgggctgctggctggcaaacagcagtgtccccaaattggtcccaattttgtctggtaagca |
54986236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 415
Target Start/End: Original strand, 18397699 - 18397862
Alignment:
| Q |
252 |
ttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaatacaatgaagagaatttctgtaatag |
351 |
Q |
| |
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||||| ||| |||| ||||| ||||| |||||||| | ||| |||| |||||| ||||||||||||| ||||| || ||||| | || ||||| |||| |
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| T |
18397699 |
ttctatcatctatacaatcaggtgtcttacatgtcgttggatgagatctctcccctaacatttagcattggaaacaccatgaaacgtatatctgtcatag |
18397798 |
T |
|
| Q |
352 |
tctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgc |
415 |
Q |
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| T |
18397799 |
tatcttcaattatcatcttccatacaccaattcagcctgtcaatgctcttggagccgcaattgc |
18397862 |
T |
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