View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1155_low_9 (Length: 415)
Name: NF1155_low_9
Description: NF1155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1155_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 70 - 403
Target Start/End: Original strand, 31108525 - 31108858
Alignment:
| Q |
70 |
attaaattagttgctgttagaatcaatacagaaaccattcaagacagtggagtctctcactactaggatagctttcttcatgaaattatatcttaagaag |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31108525 |
attaaattagttgctgttagaatcaatacagaaaccattcaagacagtggagtctctcactactaggatagctttcttcatgaaattatatcttaagaag |
31108624 |
T |
|
| Q |
170 |
acaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactca |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31108625 |
acaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactca |
31108724 |
T |
|
| Q |
270 |
ataatgaaagaaaaaagttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctc |
369 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31108725 |
ataatgaaagaaaaaagttgatttattccttaagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctc |
31108824 |
T |
|
| Q |
370 |
tgctaattaacaccatcaactgtaataatatatt |
403 |
Q |
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| T |
31108825 |
tgctaattaacaccatcaactgtaataatatatt |
31108858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 70 - 403
Target Start/End: Original strand, 38898427 - 38898755
Alignment:
| Q |
70 |
attaaattagttgctgttagaatcaatacagaaaccattcaagacagtggagtctctcactactaggatagctttcttcatgaaattatatcttaagaag |
169 |
Q |
| |
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|||||||||||| ||||| | ||| ||| ||||||||||||||| ||||| |||| ||||| | | ||||||||||||||||||||| | |||| |
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| T |
38898427 |
attaaattagtttttgttatgaacaacacaaaaaccattcaagacaatggagcctct---tactaaggttgctttcttcatgaaattatat--tgagaaa |
38898521 |
T |
|
| Q |
170 |
acaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactca |
269 |
Q |
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| T |
38898522 |
ataataatcagggacaa--gtaacatctttgttccatttaaaccgagtattgtagcatttttcttatatgtaataataacaattcttaatagaaaattca |
38898619 |
T |
|
| Q |
270 |
ataatgaaaga--aaaaagttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacc |
367 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || | ||||| |
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| T |
38898620 |
ataatgaaagagaaaaaagtcaatttattccataagattgatcaatgattacaactcttttcaaacagttctttctaaataacacaaagaattctacacc |
38898719 |
T |
|
| Q |
368 |
tctgctaattaacaccatcaactgtaataatatatt |
403 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
38898720 |
tctgctaattaacaccagcaactgtaataatatatt |
38898755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 97 - 403
Target Start/End: Original strand, 31102962 - 31103257
Alignment:
| Q |
97 |
acagaaaccattcaagacagtggagtctctcactactaggatagctttcttcatgaaattatatcttaagaagacaataattagtaagaatagtaacaac |
196 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||| | | ||||||||||||||||||||| || | || | |||||| ||| || ||||||||| |
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| T |
31102962 |
acagaaaccat-caagacagtggagcctct---tactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagt--gacaagtaacaac |
31103055 |
T |
|
| Q |
197 |
tctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaa--agaaaaaagttgattta |
294 |
Q |
| |
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||| | |||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||| ||||||||||| |||||||||| ||||| |
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|
| T |
31103056 |
tctctaccatttaaactgagtattgtagcaattttcttgtatgtgacaataacaattcttaatagaaaaatcaataatgaaagagaaaaaagtcaattta |
31103155 |
T |
|
| Q |
295 |
ttccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccatcaactgtaa |
394 |
Q |
| |
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|||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
31103156 |
ttccataagattgatcaatgattacaactcttttcaaacagttct-------taacacaaagaattcaacacctctgctaattaacaccatcaactgtaa |
31103248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31096864 - 31096925
Alignment:
| Q |
70 |
attaaattagttgctgttagaatcaatacagaaaccattcaagacagtggagtctctcacta |
131 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
31096864 |
attaaattagttactgttaggatcaacacagaaaccattcaagacaatggagtctctcacta |
31096925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31101945 - 31102006
Alignment:
| Q |
70 |
attaaattagttgctgttagaatcaatacagaaaccattcaagacagtggagtctctcacta |
131 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||| |||||||| |||| |||| |
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| T |
31101945 |
attaaattagttactgttagaatcaatacagaagccattcaattcagtggagactcttacta |
31102006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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