View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11560_low_1 (Length: 1273)

Name: NF11560_low_1
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11560_low_1
NF11560_low_1
[»] chr8 (8 HSPs)
chr8 (18-968)||(11149272-11150228)
chr8 (970-1273)||(11148912-11149223)
chr8 (1078-1206)||(25106670-25106798)
chr8 (90-138)||(29655927-29655975)
chr8 (1029-1080)||(32063489-32063541)
chr8 (1034-1070)||(41139845-41139881)
chr8 (1138-1198)||(42122750-42122810)
chr8 (1007-1065)||(2445995-2446053)
[»] chr4 (9 HSPs)
chr4 (1080-1271)||(30534564-30534756)
chr4 (1147-1229)||(24559534-24559616)
chr4 (1138-1215)||(31310708-31310785)
chr4 (1125-1229)||(50100610-50100713)
chr4 (1150-1250)||(2272537-2272637)
chr4 (1029-1080)||(33859635-33859686)
chr4 (1110-1192)||(48251784-48251866)
chr4 (1029-1070)||(24559637-24559678)
chr4 (1029-1070)||(30534550-30534590)
[»] chr7 (13 HSPs)
chr7 (1082-1251)||(44533582-44533751)
chr7 (1078-1219)||(35006457-35006598)
chr7 (1099-1235)||(32810452-32810588)
chr7 (1111-1219)||(43497215-43497323)
chr7 (1111-1209)||(223257-223355)
chr7 (1168-1211)||(33431041-33431084)
chr7 (1034-1080)||(25436757-25436804)
chr7 (1156-1219)||(35006713-35006776)
chr7 (1082-1235)||(41714277-41714430)
chr7 (376-427)||(21494889-21494938)
chr7 (1008-1067)||(29044240-29044299)
chr7 (1130-1213)||(41216878-41216961)
chr7 (1007-1070)||(44533747-44533810)
[»] chr6 (11 HSPs)
chr6 (1099-1231)||(35214115-35214247)
chr6 (1099-1206)||(17312282-17312389)
chr6 (1138-1206)||(9515494-9515562)
chr6 (1097-1220)||(8394576-8394699)
chr6 (1146-1220)||(8406985-8407059)
chr6 (1148-1196)||(10384202-10384250)
chr6 (1163-1206)||(10902813-10902856)
chr6 (1166-1240)||(344481-344555)
chr6 (1150-1228)||(34493738-34493816)
chr6 (1078-1220)||(14728617-14728758)
chr6 (1150-1195)||(1704274-1704319)
[»] chr2 (8 HSPs)
chr2 (1029-1256)||(37166388-37166612)
chr2 (1078-1250)||(14510857-14511027)
chr2 (1138-1271)||(7328903-7329037)
chr2 (1147-1218)||(474708-474779)
chr2 (82-135)||(28524491-28524544)
chr2 (1029-1080)||(7329000-7329052)
chr2 (1029-1072)||(19848471-19848514)
chr2 (82-172)||(35056896-35056986)
[»] chr3 (11 HSPs)
chr3 (1078-1219)||(28955818-28955958)
chr3 (1111-1228)||(43332154-43332270)
chr3 (1049-1200)||(31750879-31751031)
chr3 (1138-1216)||(46612187-46612264)
chr3 (1145-1229)||(11471847-11471930)
chr3 (1006-1072)||(45506365-45506431)
chr3 (1170-1256)||(29019281-29019367)
chr3 (1150-1219)||(43318050-43318118)
chr3 (1029-1070)||(35220592-35220633)
chr3 (1034-1070)||(11471794-11471830)
chr3 (1077-1198)||(25199245-25199366)
[»] chr1 (20 HSPs)
chr1 (1138-1231)||(33459117-33459210)
chr1 (1082-1197)||(9164945-9165059)
chr1 (1078-1206)||(28915404-28915535)
chr1 (1141-1214)||(34704467-34704540)
chr1 (1139-1216)||(17282066-17282143)
chr1 (1078-1219)||(28552052-28552199)
chr1 (1078-1197)||(14777854-14777974)
chr1 (1162-1213)||(37843662-37843713)
chr1 (1138-1205)||(48378117-48378184)
chr1 (1078-1228)||(14465075-14465223)
chr1 (1169-1218)||(51536578-51536627)
chr1 (1028-1072)||(28915562-28915606)
chr1 (1139-1206)||(24506626-24506693)
chr1 (1147-1206)||(30027072-30027131)
chr1 (1145-1219)||(15099968-15100041)
chr1 (1065-1235)||(29013489-29013661)
chr1 (1082-1189)||(36901216-36901323)
chr1 (1145-1219)||(15111196-15111269)
chr1 (1147-1256)||(48103984-48104093)
chr1 (1174-1235)||(49962419-49962480)
[»] chr5 (11 HSPs)
chr5 (1150-1228)||(4914924-4915002)
chr5 (1147-1200)||(13298136-13298189)
chr5 (1174-1218)||(13633780-13633824)
chr5 (1078-1214)||(36817122-36817258)
chr5 (1022-1080)||(13297967-13298026)
chr5 (1147-1229)||(35770105-35770187)
chr5 (1078-1235)||(9829800-9829957)
chr5 (1138-1197)||(39433239-39433298)
chr5 (1145-1219)||(18616415-18616488)
chr5 (1149-1206)||(25876306-25876366)
chr5 (1144-1233)||(21710731-21710820)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1094-1227)||(43143-43277)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1144-1233)||(3090-3179)


Alignment Details
Target: chr8 (Bit Score: 842; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 18 - 968
Target Start/End: Complemental strand, 11150228 - 11149272
Alignment:
Q  18 aagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150228 aagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagac 11150129  T
Q  118 atgtgttctgtccgacactgatacggcgctgacacatatat--ttacattgaattatgccaccttttcaaaatattagcgggttggtgtattagtgtaca 215  Q
    ||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11150128 atgtgttctgtccgacactgatacgacactgacacatatatatttacattgaattatgcgaccttttcaaaatattagcgggttggtgtattagtgtaca 11150029  T
Q  216 tatcgtatctggtgtctgtatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagccataaaatcattgcttggttt 315  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150028 tatcgtatctgatgtctctatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagccataaaatcattgcttggttt 11149929  T
Q  316 catggatgtggataaattccacaaactgctctcttacaactgcaatggtagaga------ctaaagagagccctttggtcatttgggtgtgtggtgaatc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||| ||||||||||||||||||||||||||||||||||||    
T  11149928 catggatgtggataaattccacaaactgctctcttacaactgcaaaggtagagatagagactagagagagccctttggtcatttgggtgtgtggtgaatc 11149829  T
Q  410 tttacatataaattatttgtaagtgagagaacaatgtgtatttatgtggttatagtagatggagaaggccaggttgtctcttgattggtgttttatccat 509  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11149828 tttacatataaattatttctaagtgagagaacaatgtgtatttatgtggttatagtagatggagaaggccaggttgtctcttgattggtgttttatccat 11149729  T
Q  510 ataaggaaaggataatgtattttaataaaataaagaagaaattcaaattcttaatttttagatggtatatttgaaattaaacttcttaatttaaattgga 609  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  11149728 ataaagaaaggataatgtattttaataa--taaagaagaaattcaaattcttaatttttagatgatatatttgaaattaaacttctaaatttaaattgga 11149631  T
Q  610 caaaatagttcataagaataataagataaaatgagaggaacaaagctaccaaccattacttgaagtactacctaaaaaacactactataaaatagtgaaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11149630 caaaatagttcataagaataataagataaaatgagaggaacaaagctaccaactattacttgaagtactacctaaaaaacactactataaaatagtgaaa 11149531  T
Q  710 actaattgccatgttacaaccaccttagagagaatttgaaattcgtcgtttgaaattaaaatgtatgttttaccattgaactgacatctcaagtgataaa 809  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11149530 actaattgccatgttacaaccaccttagagagaatttgaacttcgtcgtttgaaattaaaatgtaagttttaccattgaactgacatctcaagtgataaa 11149431  T
Q  810 taaataaatatatagctaacatctcaagtaactgctatgttacttgtatccaagaatgtgcattacagcagagcttaagagattagtaatgtgtctggat 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  11149430 taaataaatatatagctaacatctcaagtaactgctatgttacttgtatccaagaatggacattacagcaaagcttaagagattagtaatgtgtctggat 11149331  T
Q  910 ttggtttaacgactaattgttctcaaaggtttcaaatggaatataggggatggaaccaa 968  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11149330 ttcgtttaacgactaattgttctcaaaggtttcaaatggaatataggggatggaaccaa 11149272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 970 - 1273
Target Start/End: Complemental strand, 11149223 - 11148912
Alignment:
Q  970 atctttgaatccactattcaaactagtcaaaaaatgggcaaaattaaattcgtcgtctattaatttaatttcagataacgatttcgtcatttatcttttt 1069  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||    
T  11149223 atctttgaatccactattcaaactagtaaaaaaatgggcaaaattaaattcgtcctctgttaatttaatttcagataacgttttcgtcatttatcttttt 11149124  T
Q  1070 tcatgtcatttg---------atcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggt 1160  Q
    |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  11149123 tcatgtcattttcgtcatttaatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatataatctcttaatgttcaaatttatggt 11149024  T
Q  1161 tcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaaaagataaggac 1260  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  11149023 tcttcactcatgctttcatatgaa-tttagatttgatgcttgaaaactcatatgcaaacataccaaaaggacaaatataacatgataaaaagataagcac 11148925  T
Q  1261 gaaatcgttatat 1273  Q
    |||||||||||||    
T  11148924 gaaatcgttatat 11148912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1078 - 1206
Target Start/End: Complemental strand, 25106798 - 25106670
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    ||||||||||||||| |||  ||||||||||  |||| ||||||||||||| |||  || ||||||| |||||||| | |||||||||||||||||||||    
T  25106798 tttgatcaatttgcatatggattttcaagatttaaatatatgatttcatttcgataggagctcttaaggttcaaatatttggttcttcactcatgttttc 25106699  T
Q  1178 atatgaattttagatttgatgtttgaaaa 1206  Q
    |||||||||| ||| ||| || |||||||    
T  25106698 atatgaatttcagacttgctgcttgaaaa 25106670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 29655927 - 29655975
Alignment:
Q  90 tcagattaggcgtatttcggtatcagacatgtgttctgtccgacactga 138  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  29655927 tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactga 29655975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1029 - 1080
Target Start/End: Original strand, 32063489 - 32063541
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatcttt-tttcatgtcattt 1080  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  32063489 ttaacttaatttcagataacgatttcgtcttttatctttgtttaatgtcattt 32063541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1034 - 1070
Target Start/End: Complemental strand, 41139881 - 41139845
Alignment:
Q  1034 ttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    |||||||||||||||||||| ||||||||||||||||    
T  41139881 ttaatttcagataacgattttgtcatttatctttttt 41139845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1138 - 1198
Target Start/End: Complemental strand, 42122810 - 42122750
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatg 1198  Q
    |||||| ||||||| | |||||||  |||||| ||||||||||||||||||| ||||||||    
T  42122810 ctcttagtgttcaactctatggttggtcactcgtgttttcatatgaattttaaatttgatg 42122750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1007 - 1065
Target Start/End: Original strand, 2445995 - 2446053
Alignment:
Q  1007 gcaaaattaaattcgtcgtctattaatttaatttcagataacgatttcgtcatttatct 1065  Q
    ||||||||| | ||||||||  |||| |||||||||||||||||||| |||| ||||||    
T  2445995 gcaaaattacactcgtcgtcgcttaacttaatttcagataacgattttgtcacttatct 2446053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 2e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 1080 - 1271
Target Start/End: Complemental strand, 30534756 - 30534564
Alignment:
Q  1080 tgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcat 1179  Q
    ||||||||||||| |||  |||| ||||| |||||||||||||| ||||  |||||| |||||  ||||||||| | | || ||||||||||||||||||    
T  30534756 tgatcaatttgcatatggattttaaagattcaaatctatgattttatttcaatttgagctcttcgtgttcaaatctgttgtccttcactcatgttttcat 30534657  T
Q  1180 atgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaaaagat-aaggacgaaatcgttat 1271  Q
    || |||||||||||||||| ||||||| ||||||| ||||| ||||| |||| ||| || || ||| |||||||| |||||||||||||||||    
T  30534656 ataaattttagatttgatgcttgaaaattcatatgaaaacagaccaataggacaaaaatgacgtgaaaaaaagataaaggacgaaatcgttat 30534564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1147 - 1229
Target Start/End: Original strand, 24559534 - 24559616
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaag 1229  Q
    ||||||| ||||||  |||| ||||||||||||||||||||||||||| ||||||||||| |  |||||||||| ||| ||||    
T  24559534 ttcaaatctatggtcattcattcatgttttcatatgaattttagattttatgtttgaaaattagtatgcaaacaaacctaaag 24559616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1138 - 1215
Target Start/End: Original strand, 31310708 - 31310785
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgc 1215  Q
    |||||| |||| || |||||| | ||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||    
T  31310708 ctcttagtgtttaagtttatgatccttcactcatgttttcatatgaattttagatttaatacttgaaaattcatatgc 31310785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1125 - 1229
Target Start/End: Complemental strand, 50100713 - 50100610
Alignment:
Q  1125 attttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacatacc 1224  Q
    |||| ||| ||| |||||||||||||||||||||||  | || |||| |||||||||||||||||||||||||  | ||||| ||| || |||||||| |    
T  50100713 atttcgatatgagctcttaatgttcaaatttatggtcttccaatcat-ttttcatatgaattttagatttgatactagaaaattcacatacaaacatatc 50100615  T
Q  1225 aaaag 1229  Q
    |||||    
T  50100614 aaaag 50100610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1150 - 1250
Target Start/End: Complemental strand, 2272637 - 2272537
Alignment:
Q  1150 aaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaa 1249  Q
    |||| ||||||| |||| | |||||||||||||| |||||||||||||  ||||||| ||| ||  ||||| |||||||| | ||| ||||| ||| |||    
T  2272637 aaatctatggtttttcagtgatgttttcatatgacttttagatttgatacttgaaaattcaaatataaacaaaccaaaagaacaaaaataacgtgaaaaa 2272538  T
Q  1250 a 1250  Q
    |    
T  2272537 a 2272537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1029 - 1080
Target Start/End: Complemental strand, 33859686 - 33859635
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatcttttttcatgtcattt 1080  Q
    |||||||||||| | |||| ||||||||  ||||||||||||||||||||||    
T  33859686 ttaatttaattttaaataatgatttcgttctttatcttttttcatgtcattt 33859635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1110 - 1192
Target Start/End: Complemental strand, 48251866 - 48251784
Alignment:
Q  1110 caaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagat 1192  Q
    |||||| ||||||| |||||||| |||  | ||||||||||||||||| ||  ||||  ||||||||||||| || |||||||    
T  48251866 caaatcaatgattttattttgatatgaaattttaatgttcaaatttattgtcattcaaacatgttttcatataaagtttagat 48251784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1029 - 1070
Target Start/End: Complemental strand, 24559678 - 24559637
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  24559678 ttaacttaatttcagataacaatttcatcatttatctttttt 24559637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1029 - 1070
Target Start/End: Original strand, 30534550 - 30534590
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  30534550 ttaatttaatttca-ataacgatttcgtcctttatctttttt 30534590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 3e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1082 - 1251
Target Start/End: Original strand, 44533582 - 44533751
Alignment:
Q  1082 atcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatat 1181  Q
    ||||||||||| |||  |||||||||| |||||||||| ||| |||| ||| ||| |||||| ||||||||| | | || ||||||||||||||||||||    
T  44533582 atcaatttgcatatggattttcaagattcaaatctatggttttatttcgatatgagctcttagtgttcaaatcttttgtccttcactcatgttttcatat 44533681  T
Q  1182 gaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaaaa 1251  Q
    |||||||| |||||||| |||||||  |||||||||||  |||||||||| ||| ||||| ||| |||||    
T  44533682 gaattttaaatttgatgcttgaaaatccatatgcaaacggaccaaaaggacaaaaataacgtgaaaaaaa 44533751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1078 - 1219
Target Start/End: Original strand, 35006457 - 35006598
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    |||||||||||  || |||  |||||| ||| ||||  |||| ||| |||| ||| ||| ||||||||||||||||||| |||| |||||||||||||||    
T  35006457 tttgatcaattatcatatggattttcacgattcaaacatatggtttaatttcgatatgagctcttaatgttcaaatttaaggttattcactcatgttttc 35006556  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||||| |||||||||||||  | ||||| ||||||||||||    
T  35006557 atatgagttttagatttgattctcgaaaattcatatgcaaac 35006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1099 - 1235
Target Start/End: Complemental strand, 32810588 - 32810452
Alignment:
Q  1099 ttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatg 1198  Q
    |||| ||||| |||||||||| ||| | |||||| ||| ||| || | || |||| ||| |||||||||||||||||| ||||||||||| |||||||||    
T  32810588 tttttaagattcaaatctatggttttaatttgatatgaactcgtagtttttaaatctattgttcttcactcatgtttttatatgaattttggatttgatg 32810489  T
Q  1199 tttgaaaactcatatgcaaacataccaaaaggataaa 1235  Q
    |||||||| | | |  ||||||  |||||||||||||    
T  32810488 tttgaaaatttaaaaacaaacaggccaaaaggataaa 32810452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1111 - 1219
Target Start/End: Original strand, 43497215 - 43497323
Alignment:
Q  1111 aaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactca 1210  Q
    ||||||||  ||| ||||| || ||| |||||||||||||||| |||| |  | | ||||||||||||||||| |||||||||||||||||||||  |||    
T  43497215 aaatctatatttttattttaatatgagctcttaatgttcaaatatatgatcatccgctcatgttttcatatgagttttagatttgatgtttgaaagttca 43497314  T
Q  1211 tatgcaaac 1219  Q
    ||| |||||    
T  43497315 tattcaaac 43497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1111 - 1209
Target Start/End: Original strand, 223257 - 223355
Alignment:
Q  1111 aaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactc 1209  Q
    ||||||||  ||| ||||||||  || || ||| |||| ||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||| ||||    
T  223257 aaatctattgttttattttgataagagcttttagtgttaaaatttatggttctttactcatgttttcatataaattttatatttgttgtttgaatactc 223355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1168 - 1211
Target Start/End: Complemental strand, 33431084 - 33431041
Alignment:
Q  1168 tcatgttttcatatgaattttagatttgatgtttgaaaactcat 1211  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  33431084 tcatgttttcatatgaattttacatttgatgtttgaaaactcat 33431041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1034 - 1080
Target Start/End: Original strand, 25436757 - 25436804
Alignment:
Q  1034 ttaatttcagataacgatttcgtcatttatctt-ttttcatgtcattt 1080  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  25436757 ttaatttcagataacgatttcgtcttttatcttcttttcatgtcattt 25436804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1156 - 1219
Target Start/End: Original strand, 35006713 - 35006776
Alignment:
Q  1156 atggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||||||||| |||||||||||| |||| |||||||||||||  | ||||| ||||||||||||    
T  35006713 atggttcttcgctcatgttttcacatgagttttagatttgattctcgaaaattcatatgcaaac 35006776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1082 - 1235
Target Start/End: Original strand, 41714277 - 41714430
Alignment:
Q  1082 atcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatat 1181  Q
    |||||||| || |||| |||||||||| || | ||||||||| |||| ||  | | ||||||||||| | || |||   |||| ||| ||||||||||||    
T  41714277 atcaatttacatatgaattttcaagattcatacctatgattttatttagacatcaactcttaatgtttagatatataactctttactgatgttttcatat 41714376  T
Q  1182 gaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaa 1235  Q
     |||||||||||| ||  |||||||  ||||||||||   | ||||||||||||    
T  41714377 aaattttagattttatacttgaaaatccatatgcaaatggatcaaaaggataaa 41714430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 21494938 - 21494889
Alignment:
Q  376 agagccctttggtcatttgggtgtgtggtgaatctttacatataaattattt 427  Q
    |||| ||||||||||||||||||||  |||||||||||||| ||||||||||    
T  21494938 agagtcctttggtcatttgggtgtg--gtgaatctttacatgtaaattattt 21494889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1008 - 1067
Target Start/End: Original strand, 29044240 - 29044299
Alignment:
Q  1008 caaaattaaattcgtcgtctattaatttaatttcagataacgatttcgtcatttatcttt 1067  Q
    |||||||| ||| || ||||||||| ||||||||| || || ||||||||||||||||||    
T  29044240 caaaattacatttgttgtctattaacttaatttcatatgactatttcgtcatttatcttt 29044299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1130 - 1213
Target Start/End: Complemental strand, 41216961 - 41216878
Alignment:
Q  1130 gatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatat 1213  Q
    ||||||| |||||| | ||||||| |||  |  |||||| | |||||||||||||||||||||||||| ||| |||| ||||||    
T  41216961 gatttgacctcttagtattcaaatctatattgtttcacttacgttttcatatgaattttagatttgatatttaaaaattcatat 41216878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1007 - 1070
Target Start/End: Complemental strand, 44533810 - 44533747
Alignment:
Q  1007 gcaaaattaaattcgtcgtctattaatttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    ||||||||| | ||||||||  |||| ||||||||||||||| |||| ||| ||||||||||||    
T  44533810 gcaaaattacactcgtcgtcccttaacttaatttcagataaccattttgtcctttatctttttt 44533747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1099 - 1231
Target Start/End: Original strand, 35214115 - 35214247
Alignment:
Q  1099 ttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatg 1198  Q
    |||||||||| |||||||||||||| |||| ||| ||| ||||| ||||| ||||||||||||||||||||||||||| ||||  |||||| |||||| |    
T  35214115 ttttcaagattcaaatctatgattttatttcgatatgaactcttcatgtttaaatttatggttcttcactcatgtttttatatacattttaaatttgaag 35214214  T
Q  1199 tttgaaaactcatatgcaaacataccaaaagga 1231  Q
     ||  ||| ||||||||||||| | ||||||||    
T  35214215 cttagaaattcatatgcaaacaaatcaaaagga 35214247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1099 - 1206
Target Start/End: Complemental strand, 17312389 - 17312282
Alignment:
Q  1099 ttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatg 1198  Q
    |||| ||||| ||||||| || ||| ||||  |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||  |||    
T  17312389 tttttaagattcaaatctttggttttatttcaatttgagctcttaatgttcaaatctatggttcttcactcatgttttcatatgagttttatattcaatg 17312290  T
Q  1199 tttgaaaa 1206  Q
     |||||||    
T  17312289 cttgaaaa 17312282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1138 - 1206
Target Start/End: Original strand, 9515494 - 9515562
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaa 1206  Q
    |||||| | ||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  9515494 ctcttactattcaaatctattgtccttcactcatgttttcatatgaattttagatttgatgcttgaaaa 9515562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1097 - 1220
Target Start/End: Original strand, 8394576 - 8394699
Alignment:
Q  1097 acttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttga 1196  Q
    |||| |||| || ||||||||| |||| |  |||||  || ||||||  |||||||| |||| |  ||| ||| ||||||||||||||||||||||||||    
T  8394576 acttctcaatatccaaatctataattttaaattgatacgagctcttagcgttcaaatatatgatctttcgctcttgttttcatatgaattttagatttga 8394675  T
Q  1197 tgtttgaaaactcatatgcaaaca 1220  Q
    ||||||||||  ||||||||||||    
T  8394676 tgtttgaaaatccatatgcaaaca 8394699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1146 - 1220
Target Start/End: Complemental strand, 8407059 - 8406985
Alignment:
Q  1146 gttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaaca 1220  Q
    |||||||| |||| |  ||||||| ||||||||||||||||||||||||||||||| ||||  |||||| |||||    
T  8407059 gttcaaatatatgatctttcactcctgttttcatatgaattttagatttgatgtttaaaaatccatatgtaaaca 8406985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1148 - 1196
Target Start/End: Complemental strand, 10384250 - 10384202
Alignment:
Q  1148 tcaaatttatggttcttcactcatgttttcatatgaattttagatttga 1196  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  10384250 tcaaatgtatggttcttcacccatgttttcatatgaatattagatttga 10384202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1163 - 1206
Target Start/End: Complemental strand, 10902856 - 10902813
Alignment:
Q  1163 ttcactcatgttttcatatgaattttagatttgatgtttgaaaa 1206  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  10902856 ttcactcatgttttcatatgaattttaaagttgatgtttgaaaa 10902813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1166 - 1240
Target Start/End: Original strand, 344481 - 344555
Alignment:
Q  1166 actcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataa 1240  Q
    ||||||||||||||||   |||||||||||||| |||||||  |||||||||||| | ||||| |||||| ||||    
T  344481 actcatgttttcatatatgttttagatttgatggttgaaaatccatatgcaaacagatcaaaaagataaaaataa 344555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1150 - 1228
Target Start/End: Original strand, 34493738 - 34493816
Alignment:
Q  1150 aaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaa 1228  Q
    |||| ||||||||||||  |||| || ||||||||| || ||| ||| ||||||||| ||||||||||||| |||||||    
T  34493738 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaacaaaccaaaa 34493816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1220
Target Start/End: Complemental strand, 14728758 - 14728617
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    |||||||||||||| ||  ||||| ||| ||  ||||||||| ||| ||||| || ||| || ||  |||| |||| ||| ||||||||||||||| |||    
T  14728758 tttgatcaatttgctaagaacttt-caaaatttaaatctatggttttattttaatatgaacttttggtgtttaaatctattgttcttcactcatgtattc 14728660  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatgcaaaca 1220  Q
    | ||  ||| || | ||||| ||||||||||||||| ||||||    
T  14728659 acatatattgtacaattgatatttgaaaactcatatacaaaca 14728617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1150 - 1195
Target Start/End: Original strand, 1704274 - 1704319
Alignment:
Q  1150 aaatttatggttcttcactcatgttttcatatgaattttagatttg 1195  Q
    |||| |||||| |||||||||| ||||||||||||||||| |||||    
T  1704274 aaatatatggtccttcactcatattttcatatgaattttaaatttg 1704319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 6e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1029 - 1256
Target Start/End: Original strand, 37166388 - 37166612
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatctttt-ttcatgtcatttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcatt 1127  Q
    |||| |||||||||||||||||||||||| | |||||||| |||||    ||||||||||||||| | || ||||||   | | ||| |||||||| | |    
T  37166388 ttaacttaatttcagataacgatttcgtcgtctatcttttcttcat----tttgatcaatttgcataagaattttcacatttcgaatttatgattttagt 37166483  T
Q  1128 ttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaa 1227  Q
    ||||| |||  ||||  |||||||| ||||  | ||||||||||||||| |||||||||||||| |||||| || |||| |||||||||| || ||||||    
T  37166484 ttgatatgagttcttggtgttcaaacttattctccttcactcatgtttttatatgaattttagacttgatgcttaaaaattcatatgcaagcaaaccaaa 37166583  T
Q  1228 aggataaatataacatgataaaaagataa 1256  Q
      |||||| || || ||| ||||||||||    
T  37166584 tagataaaaatgacgtgaaaaaaagataa 37166612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1078 - 1250
Target Start/End: Complemental strand, 14511027 - 14510857
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgt-ttt 1176  Q
    |||||| |||||| | |||| |||||||||| ||||||||| |||| |||||||| | |  | ||| ||||||||| |||||| ||||| |  ||| |||    
T  14511027 tttgataaatttgtatatgaattttcaagattcaaatctataattttattttgatataagtttttagtgttcaaatatatggtccttcatt--tgtattt 14510930  T
Q  1177 catatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaaa 1250  Q
    ||||||||||||| |||||||| || || | ||||| | ||||||| |||||||||||| ||||| ||||||||    
T  14510929 catatgaattttaaatttgatgcttaaagattcatacgaaaacatatcaaaaggataaa-ataacgtgataaaa 14510857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1138 - 1271
Target Start/End: Original strand, 7328903 - 7329037
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaata 1237  Q
    |||||||||||||||| |||| |  |||| |||||||||||||||| |||| ||||||||| |||| ||  |||||||||||   |||||| || ||| |    
T  7328903 ctcttaatgttcaaatctatgttcgttcattcatgttttcatatgagtttttgatttgatgcttgataatccatatgcaaacgggccaaaatgacaaaaa 7329002  T
Q  1238 taacatgataaaaagat-aaggacgaaatcgttat 1271  Q
    | || ||| ||| |||| ||| |||||||||||||    
T  7329003 tgacgtgaaaaacagataaagaacgaaatcgttat 7329037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1147 - 1218
Target Start/End: Original strand, 474708 - 474779
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaa 1218  Q
    ||||||| |||||| |||||| ||||||| ||||||||| ||| |||||| | ||||||| |||||||||||    
T  474708 ttcaaatctatggtccttcacccatgtttgcatatgaatcttaaatttgaagcttgaaaattcatatgcaaa 474779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
Q  82 gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacac 135  Q
    ||||||||||||||||||||| |||| || ||||||| ||||| ||||||||||    
T  28524544 gacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacac 28524491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1029 - 1080
Target Start/End: Complemental strand, 7329052 - 7329000
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatct-tttttcatgtcattt 1080  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  7329052 ttaatttaatttcagataacgatttcgttctttatctgtttttcacgtcattt 7329000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1029 - 1072
Target Start/End: Original strand, 19848471 - 19848514
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatcttttttca 1072  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||    
T  19848471 ttaacttaattttagataacgatttcgtcatttatcatttttca 19848514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 35056986 - 35056896
Alignment:
Q  82 gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacatatatttacattgaattat 172  Q
    |||||| |||||||||||||| |||| || || |||| ||||  |||||||||| || ||| | | |||||||||| ||||| ||||||||    
T  35056986 gacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 9e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1078 - 1219
Target Start/End: Complemental strand, 28955958 - 28955818
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    ||||||||| ||||| |||  |||||||||| |||||||||||||| ||||  || |||  ||| |||||||||||||||||||||| |||||||||||     
T  28955958 tttgatcaacttgcatatgtattttcaagattcaaatctatgattttatttcaatatgagttctaaatgttcaaatttatggttctttactcatgtttt- 28955860  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||  |||||||||||||||| |||||   ||||||||||||    
T  28955859 atacaaattttagatttgatgcttgaacgttcatatgcaaac 28955818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1111 - 1228
Target Start/End: Original strand, 43332154 - 43332270
Alignment:
Q  1111 aaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactca 1210  Q
    |||| |||| ||| |||| ||| ||| |||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||| |||| ||| |||    
T  43332154 aaatttatggttttatttcgatatgaactcttaatgttcaaatctatggttatttactcatgttttcatatgaaatttagatttgatatttg-aaagtca 43332252  T
Q  1211 tatgcaaacataccaaaa 1228  Q
    |||||||| | |||||||    
T  43332253 tatgcaaaaagaccaaaa 43332270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 1049 - 1200
Target Start/End: Complemental strand, 31751031 - 31750879
Alignment:
Q  1049 gatttcgtcatttatcttttttcatgtcattt-gatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgt 1147  Q
    ||||| ||||||||| ||||| ||  |||||| ||| |||||||| |||| |||||||||| |||||||||| ||| |||||||| | |  ||||| |||    
T  31751031 gattttgtcatttatttttttgcacatcattttgattaatttgcatatgaattttcaagattcaaatctatggttttattttgatataagttcttagtgt 31750932  T
Q  1148 tcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtt 1200  Q
    |||||| ||||||  || ||| || ||||||||||||||||| ||||||||||    
T  31750931 tcaaatatatggtcttttacttatattttcatatgaattttatatttgatgtt 31750879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1138 - 1216
Target Start/End: Original strand, 46612187 - 46612264
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgca 1216  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||| || |||||||||||||||| |||| |||||||||    
T  46612187 ctcttaatgttcaaatctatggtt-ttcactcatgttttcttataaaatttagatttgatgtttaaaaattcatatgca 46612264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1145 - 1229
Target Start/End: Complemental strand, 11471930 - 11471847
Alignment:
Q  1145 tgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaag 1229  Q
    ||||||||| |||| | |||||||||| |||||||||||||||||||||||||| |||||||  |||||||||| | ||||||||    
T  11471930 tgttcaaatctatgatccttcactcat-ttttcatatgaattttagatttgatgcttgaaaatgcatatgcaaaaagaccaaaag 11471847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1006 - 1072
Target Start/End: Complemental strand, 45506431 - 45506365
Alignment:
Q  1006 ggcaaaattaaattcgtcgtctattaatttaatttcagataacgatttcgtcatttatcttttttca 1072  Q
    |||||||||| |||| |||||| |||| ||||||| ||||||||||||||||||||||| |||||||    
T  45506431 ggcaaaattacattcatcgtcttttaacttaattttagataacgatttcgtcatttatcatttttca 45506365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1170 - 1256
Target Start/End: Original strand, 29019281 - 29019367
Alignment:
Q  1170 atgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgataaaaagataa 1256  Q
    |||||||||||| ||||||| |||||||| ||||||| ||||||||||||  ||||||  |||||| || | |||| ||||||||||    
T  29019281 atgttttcatattaattttaaatttgatgcttgaaaattcatatgcaaacggaccaaattgataaaaatgatatgaaaaaaagataa 29019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1150 - 1219
Target Start/End: Original strand, 43318050 - 43318118
Alignment:
Q  1150 aaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||||  || |||| ||||||||||||    
T  43318050 aaatttatggtccttcactcatgtttttatatgaaatttagatttgatactt-aaaaatcatatgcaaac 43318118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1029 - 1070
Target Start/End: Original strand, 35220592 - 35220633
Alignment:
Q  1029 ttaatttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  35220592 ttaacttaatttcagataacaatttcgtcatttatctttttt 35220633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1034 - 1070
Target Start/End: Original strand, 11471794 - 11471830
Alignment:
Q  1034 ttaatttcagataacgatttcgtcatttatctttttt 1070  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11471794 ttaatttcagataacgatttcatcatttatctttttt 11471830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1077 - 1198
Target Start/End: Original strand, 25199245 - 25199366
Alignment:
Q  1077 atttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgtttt 1176  Q
    |||||||||||||||| |||| |||| ||||| |||||||||  ||| ||||  || |||  | ||| |||| ||||||||||| ||||||| ||||  |    
T  25199245 atttgatcaatttgcatatgaatttttaagattcaaatctatagttttatttcaatatgagtttttagtgtttaaatttatggtccttcacttatgtcat 25199344  T
Q  1177 catatgaattttagatttgatg 1198  Q
     ||| |||||| ||||| ||||    
T  25199345 tataagaatttaagattcgatg 25199366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 9e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1138 - 1231
Target Start/End: Complemental strand, 33459210 - 33459117
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaagga 1231  Q
    |||||| ||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||||| |||||  ||||||||||    
T  33459210 ctcttagtgttcaaatatatggttcttcattgatgttttcatataaattttagatttgatgtttgaaaattcatattcaaacggaccaaaagga 33459117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1082 - 1197
Target Start/End: Complemental strand, 9165059 - 9164945
Alignment:
Q  1082 atcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatat 1181  Q
    |||||| | |||||||||||||||||| ||||||||| |||| |||| ||| ||| |||||||||||||||| |||  | |||||||||||||||||| |    
T  9165059 atcaatatacaaatgacttttcaagattcaaatctat-attttatttcgatatgagctcttaatgttcaaatctataatacttcactcatgttttcattt 9164961  T
Q  1182 gaattttagatttgat 1197  Q
    |||||||| |||||||    
T  9164960 gaattttatatttgat 9164945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1078 - 1206
Target Start/End: Original strand, 28915404 - 28915535
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagat----gcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgt 1173  Q
    ||||||||||||||| |||| |||| |||||     |||||||||||||| |||| ||| |||  ||||| ||||||||| ||| || ||||||||||||    
T  28915404 tttgatcaatttgcatatgaatttttaagattcaatcaaatctatgattttatttcgatatgagttcttattgttcaaatctatagtccttcactcatgt 28915503  T
Q  1174 tttcatatgaattttagatttgatgtttgaaaa 1206  Q
    ||| ||||||||||||||||||||| |||||||    
T  28915504 ttt-atatgaattttagatttgatggttgaaaa 28915535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1141 - 1214
Target Start/End: Complemental strand, 34704540 - 34704467
Alignment:
Q  1141 ttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatg 1214  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||    
T  34704540 ttaatgtttaaatgtatggttcttcattcatgttttcatatgaattttagatttgatacttgaaaattcatatg 34704467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1139 - 1216
Target Start/End: Complemental strand, 17282143 - 17282066
Alignment:
Q  1139 tcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgca 1216  Q
    |||||||||||||||||||| | ||| | || |||||||||||||||||||||||||||| || |||| |||||||||    
T  17282143 tcttaatgttcaaatttatgatgctttattcgtgttttcatatgaattttagatttgatgcttaaaaattcatatgca 17282066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1078 - 1219
Target Start/End: Original strand, 28552052 - 28552199
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgattt------gatctcttaatgttcaaatttatggttcttcactcat 1171  Q
    |||||||||||| || |||| |||| ||||| ||||||||| |||   |||||||||      || |||||| ||||||| | |||||| ||||| ||||    
T  28552052 tttgatcaatttacatatgaatttttaagattcaaatctataattctcttttgattttgataggaactcttagtgttcaagtatatggtccttcaatcat 28552151  T
Q  1172 gttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||||||||||||||||||||||| || |||||||   ||||||||||    
T  28552152 gttttcatatgaattttagatttgctgcttgaaaatctatatgcaaac 28552199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1078 - 1197
Target Start/End: Complemental strand, 14777974 - 14777854
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaa-tctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgtttt 1176  Q
    ||||||||||||||| |  | |||| ||||| |||| |||||||||| |||||||| |||||  ||| ||  ||||| |||| || |||| |||||||||    
T  14777974 tttgatcaatttgcataccaatttttaagattcaaaatctatgattttattttgatatgatcaattagtgcacaaatatatgattattcattcatgtttt 14777875  T
Q  1177 catatgaattttagatttgat 1197  Q
    |||||||| ||||||||||||    
T  14777874 catatgaaatttagatttgat 14777854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1162 - 1213
Target Start/End: Complemental strand, 37843713 - 37843662
Alignment:
Q  1162 cttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatat 1213  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  37843713 cttcacttatgttttcatatgaatattagatttgatgtttgaaaattcatat 37843662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1138 - 1205
Target Start/End: Complemental strand, 48378184 - 48378117
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaa 1205  Q
    ||||||||||| |||| |||| |||||||||||||||||||||  |||| |||||||| |||||||||    
T  48378184 ctcttaatgtttaaatatatgattcttcactcatgttttcatacaaattatagatttgttgtttgaaa 48378117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1078 - 1228
Target Start/End: Original strand, 14465075 - 14465223
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    |||||||||||| || |||| ||||||||||  || | |||||||| ||||||||  ||  | ||| ||||||||| |||||| ||||| |||| ||| |    
T  14465075 tttgatcaattttcatatgaattttcaagattaaagtttatgattttattttgatacgagtt-ttagtgttcaaatctatggtccttcaatcatattt-c 14465172  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaa 1228  Q
    |||| ||||||| ||| ||||  | ||||||||||||||||||| ||||||    
T  14465173 atattaattttatattagatgcataaaaactcatatgcaaacatgccaaaa 14465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1169 - 1218
Target Start/End: Original strand, 51536578 - 51536627
Alignment:
Q  1169 catgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaa 1218  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  51536578 catgttttcatatgaattttagatttaatgtttcaaaattcatatgcaaa 51536627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1028 - 1072
Target Start/End: Complemental strand, 28915606 - 28915562
Alignment:
Q  1028 attaatttaatttcagataacgatttcgtcatttatcttttttca 1072  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||    
T  28915606 attaacttaatttcagataacgatttcgtcctttatcttttttca 28915562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1139 - 1206
Target Start/End: Original strand, 24506626 - 24506693
Alignment:
Q  1139 tcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaa 1206  Q
    ||||| |||| |||| |||| |||||||||||| ||||||||||||||||  |||||||| |||||||    
T  24506626 tcttagtgtttaaatatatgattcttcactcatattttcatatgaattttttatttgatgcttgaaaa 24506693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1147 - 1206
Target Start/End: Complemental strand, 30027131 - 30027072
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaa 1206  Q
    ||||||| ||||||||||||  ||||||| |||||||||||||||||||| | |||||||    
T  30027131 ttcaaatctatggttcttcagccatgtttgcatatgaattttagatttgaagcttgaaaa 30027072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1145 - 1219
Target Start/End: Original strand, 15099968 - 15100041
Alignment:
Q  1145 tgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||| |||| |||||||||| ||||||||||| || ||||||||| |||||||||||  ||| ||||||||||||    
T  15099968 tgttaaaatatatggttctt-actcatgttttgatctgaattttaaatttgatgtttacaaattcatatgcaaac 15100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1065 - 1235
Target Start/End: Original strand, 29013489 - 29013661
Alignment:
Q  1065 ttttttcatgtcattt-gatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttct 1163  Q
    |||||||||||||||| ||| ||||||   |||  || |||||||  |||| |||||||| |||||||| |||  ||||| |||| |||| ||| ||| |    
T  29013489 ttttttcatgtcattttgattaatttgtctatggtttgtcaagatttaaatatatgattttattttgatatgagttcttagtgtttaaatatatagtttt 29013588  T
Q  1164 tcactcatgttttcatatgaatttt--agatttgatgtttgaaaactcatatgcaaacataccaaaaggataaa 1235  Q
    | | |||||||| ||||||||||||  ||||||||||||| ||||   |||| |||||||| |||||| |||||    
T  29013589 ttattcatgttt-catatgaattttttagatttgatgtttaaaaatcaatattcaaacatatcaaaagaataaa 29013661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1082 - 1189
Target Start/End: Original strand, 36901216 - 36901323
Alignment:
Q  1082 atcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatat 1181  Q
    ||||||||||  |||  |||| ||||| |||| ||||| ||| |||||||| ||| ||| || | ||||||| ||||||  ||||||||  |||||||||    
T  36901216 atcaatttgcttatggatttttaagattcaaaactatggttttattttgatatgaactcatagtattcaaatctatggtctttcactcacattttcatat 36901315  T
Q  1182 gaatttta 1189  Q
    ||||||||    
T  36901316 gaatttta 36901323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1145 - 1219
Target Start/End: Original strand, 15111196 - 15111269
Alignment:
Q  1145 tgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||| |||| |||||||||| ||||||||||| || ||| ||||| |||||||||||  ||| ||||||||||||    
T  15111196 tgttaaaatatatggttctt-actcatgttttgatctgagttttaaatttgatgtttacaaattcatatgcaaac 15111269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1147 - 1256
Target Start/End: Original strand, 48103984 - 48104093
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaatataacatgat 1246  Q
    ||||||||||||||| ||||  | || ||| |||||| ||||| |||| ||||||||| | |  | || ||||  ||||||| |||||| |||||||||     
T  48103984 ttcaaatttatggttattcatccgtgcttttatatgagttttaaattttatgtttgaacatttgtttgtaaacgaaccaaaaagataaaaataacatgag 48104083  T
Q  1247 aaaaagataa 1256  Q
    ||||||||||    
T  48104084 aaaaagataa 48104093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1174 - 1235
Target Start/End: Complemental strand, 49962480 - 49962419
Alignment:
Q  1174 tttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaa 1235  Q
    ||||||||||||||||||||| |||||| |||| | |||| |||||  ||||||| ||||||    
T  49962480 tttcatatgaattttagatttaatgtttcaaaatttatatacaaacgaaccaaaatgataaa 49962419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1150 - 1228
Target Start/End: Original strand, 4914924 - 4915002
Alignment:
Q  1150 aaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaa 1228  Q
    ||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||    
T  4914924 aaatttatgatcattcattcatgttttcatatgaattttagatttgatgtttgaaaatttatatgcaaacaaaccaaaa 4915002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1147 - 1200
Target Start/End: Original strand, 13298136 - 13298189
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtt 1200  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  13298136 ttcaaatatatggttattcactcgtgttttcatatgaattttaaatttgatgtt 13298189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1174 - 1218
Target Start/End: Complemental strand, 13633824 - 13633780
Alignment:
Q  1174 tttcatatgaattttagatttgatgtttgaaaactcatatgcaaa 1218  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  13633824 tttcatatgaattttagatttgatgcttgaaaattcatatgcaaa 13633780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1078 - 1214
Target Start/End: Original strand, 36817122 - 36817258
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    ||||||||||||| | |||| ||||||| || |||| ||||| ||| |||| ||| ||| |  ||| ||||||||| |||| |  ||| ||||  |||||    
T  36817122 tttgatcaatttggatatgaattttcaaaattcaaaactatggttttatttcgatatgaacatttagtgttcaaatctatgatctttctctcacattttc 36817221  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatg 1214  Q
    |||||||||||| |||||||  ||||||| |||||||    
T  36817222 atatgaattttatatttgatacttgaaaattcatatg 36817258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1022 - 1080
Target Start/End: Original strand, 13297967 - 13298026
Alignment:
Q  1022 tcgtctattaatttaatttcagataacgatttcgtcatttatctt-ttttcatgtcattt 1080  Q
    |||||| |||||||||||||| |||||||||||| |||||||||| |||||| |||||||    
T  13297967 tcgtctcttaatttaatttcaaataacgatttcggcatttatcttattttcaagtcattt 13298026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1147 - 1229
Target Start/End: Original strand, 35770105 - 35770187
Alignment:
Q  1147 ttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaag 1229  Q
    ||||||| ||||||||| ||||  |||| |||||||||| ||| ||||||||||| |||| |||| || ||||||| ||||||    
T  35770105 ttcaaatctatggttctacactggtgttatcatatgaatcttaaatttgatgtttaaaaattcatgtgaaaacatatcaaaag 35770187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1078 - 1235
Target Start/End: Complemental strand, 9829957 - 9829800
Alignment:
Q  1078 tttgatcaatttgcaaatgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttc 1177  Q
    |||||||||||||||  ||| |||| ||||| ||||| |||||||  ||||  || ||| || ||  || |||||  |||| |  |||||||||||| ||    
T  9829957 tttgatcaatttgcatgtgaatttttaagattcaaatttatgattatatttcaatatgaacttttggtgctcaaacatatgatcattcactcatgttatc 9829858  T
Q  1178 atatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggataaa 1235  Q
    |||| |||||||||||||||| ||||||| |||  ||||||   ||||||| ||||||    
T  9829857 atataaattttagatttgatgattgaaaattcacttgcaaatggaccaaaatgataaa 9829800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1138 - 1197
Target Start/End: Original strand, 39433239 - 39433298
Alignment:
Q  1138 ctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgat 1197  Q
    |||||| ||||||||| ||| || ||||||||| |||||  |||||||||||||||||||    
T  39433239 ctcttactgttcaaatctattgtccttcactcaggtttttgtatgaattttagatttgat 39433298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1145 - 1219
Target Start/End: Complemental strand, 18616488 - 18616415
Alignment:
Q  1145 tgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaac 1219  Q
    |||| |||| |||||||||| ||||||||||| || ||| ||||| |||||||||||  ||| ||||||||||||    
T  18616488 tgttaaaatatatggttctt-actcatgttttgatctgagttttaaatttgatgtttacaaattcatatgcaaac 18616415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1149 - 1206
Target Start/End: Complemental strand, 25876366 - 25876306
Alignment:
Q  1149 caaatttatggttcttcactcatgttt---tcatatgaattttagatttgatgtttgaaaa 1206  Q
    |||||||| |||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  25876366 caaatttacggtctttcactcatgtttatttcatatgaattttaaatttgatgtttgaaaa 25876306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1144 - 1233
Target Start/End: Complemental strand, 21710820 - 21710731
Alignment:
Q  1144 atgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggata 1233  Q
    ||||| ||||||||||   |||||||||||||| |||||||||||||||  ||| ||||| ||  |||||||| ||| ||  ||||||||    
T  21710820 atgtttaaatttatggcctttcactcatgtttttatatgaattttagatcagatatttgagaatccatatgcatacaaactgaaaggata 21710731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1094 - 1227
Target Start/End: Complemental strand, 43277 - 43143
Alignment:
Q  1094 atgacttttcaagatgcaaatctatgatttcattttgatttgatctcttaatgttcaaatttatggttcttcactcatgttttcatatgaattt-tagat 1192  Q
    |||| |||||||||| |||||| ||||||| ||||| || ||| |||||| ||||||||| |||||   ||||||||||||||| || ||||||  | ||    
T  43277 atgaattttcaagattcaaatcaatgattttattttaatatgaactcttagtgttcaaatctatggccattcactcatgttttcttaagaatttaaaaat 43178  T
Q  1193 ttgatgtttgaaaactcatatgcaaacataccaaa 1227  Q
    |||||| |||||||  ||||| |||| | ||||||    
T  43177 ttgatgcttgaaaatccatattcaaatagaccaaa 43143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1144 - 1233
Target Start/End: Original strand, 3090 - 3179
Alignment:
Q  1144 atgttcaaatttatggttcttcactcatgttttcatatgaattttagatttgatgtttgaaaactcatatgcaaacataccaaaaggata 1233  Q
    ||||| ||||||||||   |||||||||||||| |||||||||||||||  ||| ||||| ||  |||||||| ||| ||  ||||||||    
T  3090 atgtttaaatttatggcctttcactcatgtttttatatgaattttagatcagatatttgagaatccatatgcatacaaactgaaaggata 3179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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