View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11560_low_10 (Length: 285)

Name: NF11560_low_10
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11560_low_10
NF11560_low_10
[»] chr4 (34 HSPs)
chr4 (12-270)||(27425619-27425877)
chr4 (12-196)||(27420289-27420473)
chr4 (12-198)||(27570124-27570310)
chr4 (28-270)||(27566042-27566284)
chr4 (57-270)||(27412479-27412690)
chr4 (12-188)||(27423111-27423287)
chr4 (17-196)||(27415505-27415681)
chr4 (26-196)||(27563435-27563608)
chr4 (17-93)||(27506682-27506758)
chr4 (19-185)||(27444876-27445033)
chr4 (17-118)||(27486942-27487043)
chr4 (17-137)||(27585628-27585748)
chr4 (26-118)||(27513865-27513957)
chr4 (29-118)||(27469419-27469508)
chr4 (26-102)||(27476662-27476738)
chr4 (26-118)||(27526201-27526293)
chr4 (12-103)||(27557463-27557554)
chr4 (12-118)||(27523478-27523584)
chr4 (61-102)||(27498390-27498431)
chr4 (17-118)||(27501276-27501377)
chr4 (61-102)||(27554284-27554325)
chr4 (221-270)||(27563639-27563688)
chr4 (17-93)||(27478963-27479039)
chr4 (17-93)||(27486023-27486099)
chr4 (17-93)||(27497402-27497478)
chr4 (17-93)||(27527145-27527221)
chr4 (12-91)||(27468402-27468481)
chr4 (19-118)||(27500420-27500519)
chr4 (132-181)||(27526289-27526338)
chr4 (12-96)||(27431223-27431307)
chr4 (26-118)||(27479860-27479952)
chr4 (144-188)||(27500527-27500571)
chr4 (26-118)||(27505791-27505883)
chr4 (144-184)||(27516798-27516838)
[»] chr5 (3 HSPs)
chr5 (17-93)||(1756837-1756913)
chr5 (26-102)||(1754330-1754406)
chr5 (26-93)||(1754672-1754739)
[»] chr3 (3 HSPs)
chr3 (26-108)||(38024964-38025046)
chr3 (26-108)||(38031416-38031498)
chr3 (12-96)||(50909941-50910025)
[»] chr8 (1 HSPs)
chr8 (26-93)||(21607385-21607452)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 27425877 - 27425619
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 111  Q
    |||| |||||| | ||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425877 atgatggttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 27425778  T
Q  112 agctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaatatttagttttnnnn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        
T  27425777 agctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaatattcagttttaaaa 27425678  T
Q  212 nnngacctgtaagcaagaagcaagtttttgaaattggaatggtttaggatgtgaatgat 270  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425677 aaagacctgtaagcaagaagcaagtttttgaaattggaatggtttaggatgtgaatgat 27425619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 27420473 - 27420289
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 111  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  27420473 atgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttga 27420374  T
Q  112 agctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  27420373 agctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaa 27420289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 27570124 - 27570310
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  27570124 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttttga 27570223  T
Q  112 agctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaata 198  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||    ||||||||||||| ||||||||||||| |||||||||||    
T  27570224 agctgatcggtttccagaaaaagatgcccttctgatgataccagggggacgaaaacccatttttgtatgtgttaacacttgagaata 27570310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 27566042 - 27566284
Alignment:
Q  28 gtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgatcggtttgca 127  Q
    |||||||| |||||||||| | ||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||| ||||||| ||    
T  27566042 gtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttttgaaactgctcggtttcca 27566141  T
Q  128 gaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaatatttagttttnnnnnnngacctgtaagcaa 227  Q
      |||||||||| || |||| |||| ||  |||||||||||||||| |||||| ||| ||||||||||| | || |||||       ||| |||||||||    
T  27566142 acaaatgatgcccttttgataatactagggaaacgaaaacccattgctgtatgcgttcaaacttgagaaaaattggtttt-aaaaaagacttgtaagcaa 27566240  T
Q  228 gaagcaagttttt-gaaattggaatggtttaggatgtgaatgat 270  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  27566241 gaagcaagtttttggaaattggaatggtttaggatgtgaatgat 27566284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 270
Target Start/End: Complemental strand, 27412690 - 27412479
Alignment:
Q  57 gtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagc 156  Q
    |||||||||||||||| || |||| |||||||||||||| ||| |||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||     
T  27412690 gtttctctccaacatacacggcaatatatccctttggcatgtcaacagcttttgaaactgctcggtttgcagaaaatgatgcccttctgatgataccaga 27412591  T
Q  157 aaaacgaaaacccattgttgtatgtgttaaaacttgagaatatttagttttnnnnnnngacctgtaagcaagaagcaagtttttgaaattggaatggttt 256  Q
     ||||||||||||||| |||||||||||| ||||| |    |  | ||| |       ||| ||||||||||||||||||||||||||||  ||||||||    
T  27412590 gaaacgaaaacccatttttgtatgtgttagaacttaaattcaaatggttgt--aggaagacttgtaagcaagaagcaagtttttgaaattaaaatggttt 27412493  T
Q  257 aggatgtgaatgat 270  Q
    ||||||||||||||    
T  27412492 aggatgtgaatgat 27412479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 27423287 - 27423111
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 111  Q
    ||||||||||| | |||||||||| | ||||||||| ||| |||||||||| |||||||||||| |||||||||| |||||||| |||| ||||||| ||    
T  27423287 atgaaggttggttcaagtatgatatgcggatcacatgccgtgtctgtttctatccaacatatacagcaagatatctctttggcatgtccgcagcttttga 27423188  T
Q  112 agctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaa 188  Q
       || |||||||||||||||||| ||| ||||||| |||||||  ||||| | |||||||||||||||||||||||    
T  27423187 tattgctcggtttgcagaaaatgaggcccttctgataataccagagaaacggatacccattgttgtatgtgttaaaa 27423111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 27415681 - 27415505
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctg 116  Q
    |||||| | |||||||||| |||||||||| | ||| | |||||   ||||||||| ||||||||||||||||||||||| |||||| |||| |||  |     
T  27415681 ggttggttcaagtatgatatggggatcacaaatcgcttttgttt---tccaacatacactgcaagatatccctttggcacatccacaacttttgaaatta 27415585  T
Q  117 atcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaa 196  Q
     |||| ||||||||||||||| |||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||    
T  27415584 ctcggcttgcagaaaatgatgactttctgatgatactagggacacgaaaacccattgttgtatgtgttaaaacttgagaa 27415505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 27563435 - 27563608
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgatcggtttg 125  Q
    |||||||||||||||||||||   | | | ||||| |||||||| || ||||||||||| |||||||||||||||||| |||| | | |||||||| |||    
T  27563435 aagtatgatacggggatcacaattctcttttgtttatctccaacgtacactgcaagatagccctttggcacgtccacaacttttgtaactgatcggcttg 27563534  T
Q  126 cagaaa---atgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaa 196  Q
     || ||   |||||| | |||| ||||||||||  |||||||||||||||| ||  ||||||||||||||||||    
T  27563535 aagtaaacgatgatgaccttctaatgataccaggtaaacgaaaacccattgctgagtgtgttaaaacttgagaa 27563608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 27506758 - 27506682
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| ||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  27506758 ggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttgg 27506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 27444876 - 27445033
Alignment:
Q  19 ttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    |||||| ||||||||||  ||||||||| ||| | ||  || ||||||||| |||||||||||||||||||||||||| |||||  |||| |||| || |    
T  27444876 ttggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacatccacgccttttgaagatgtt 27444975  T
Q  119 cggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgtta 185  Q
     ||||||||         ||| ||||||||||||| |  ||||||||||||||| ||||||||||||    
T  27444976 tggtttgca---------gcccttctgatgataccggttaaacgaaaacccattcttgtatgtgtta 27445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 27487043 - 27486942
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctg 116  Q
    |||||| ||||||||||||  ||||||||| ||||| ||  ||||||||| || || ||||| |||||||||||||| |||||||||||||| |||| ||    
T  27487043 ggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccacagcttttgaagatg 27486944  T
Q  117 at 118  Q
    ||    
T  27486943 at 27486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 27585748 - 27585628
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctg 116  Q
    |||||| | ||||||||||||||||||||| | | | | ||||| || |||||  | ||||| |||||||||||||||||||||||| |||| ||| |||    
T  27585748 ggttggttcaagtatgatacggggatcacaaatctcttttgtttatcaccaacgcacactgcgagatatccctttggcacgtccacaacttttgaaactg 27585649  T
Q  117 atcggtttgcagaaaatgatg 137  Q
    ||||| ||| || ||||||||    
T  27585648 atcggcttgaagtaaatgatg 27585628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 27513865 - 27513957
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    ||||||||||  ||||||||| ||||| ||  ||||||||| ||||| ||||| |||||||| ||||||||||| |||||||| |||| ||||    
T  27513865 aagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcacgtcaacagcttttgaagatgat 27513957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 27469508 - 27469419
Alignment:
Q  29 tatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    |||||||  ||||||||| ||||| ||  ||||||||| || || ||||| |||||||||||||| |||||||||||||| |||| ||||    
T  27469508 tatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccacagcttttgaagatgat 27469419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 27476738 - 27476662
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccac 102  Q
    ||||||||||| || |||||| ||||| ||  |||||| |||||||| ||||| |||||||||||||| ||||||||    
T  27476738 aagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttggaacgtccac 27476662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 27526201 - 27526293
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    ||||||||||| || |||||| ||||| ||  ||||||||||||||| ||||| |||||||||||||| || || ||| |||| |||| ||||    
T  27526201 aagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaacatcgacaccttttgaagatgat 27526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 27557554 - 27557463
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccaca 103  Q
    |||| |||||| |||||||||| |  ||||||||| ||| | ||  || ||||||||||||||| |||||||||||| ||||||| ||||||    
T  27557554 atgatggttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacatccaca 27557463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 27523478 - 27523584
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcga 111  Q
    |||||| |||| | || |||||||| || |||||| ||||| ||  ||||||||| || || ||||| ||||| |||||||| |||||||||||||| ||    
T  27523478 atgaagtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagccctttggaacgtccacagcttttga 27523577  T
Q  112 agctgat 118  Q
    || ||||    
T  27523578 agatgat 27523584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 27498431 - 27498390
Alignment:
Q  61 ctctccaacatatactgcaagatatccctttggcacgtccac 102  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  27498431 ctctccaacatatactgctagatatccctttggcatgtccac 27498390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 27501377 - 27501276
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctg 116  Q
    |||||| ||||||||||||  ||||||||| ||||  ||  || |||||||||||||||||| ||| |||||||||| || || ||| |||| |||| ||    
T  27501377 ggttggtttaagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttggaacctcgacaccttttgaagatg 27501278  T
Q  117 at 118  Q
    ||    
T  27501277 at 27501276  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 27554325 - 27554284
Alignment:
Q  61 ctctccaacatatactgcaagatatccctttggcacgtccac 102  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  27554325 ctctccaacatatactgcaaggtatccctttggcacatccac 27554284  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 27563639 - 27563688
Alignment:
Q  221 taagcaagaagcaagtttttgaaattggaatggtttaggatgtgaatgat 270  Q
    ||||||| || ||||||||||||||| ||||| |||||||||||||||||    
T  27563639 taagcaataaccaagtttttgaaatttgaatgctttaggatgtgaatgat 27563688  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 27478963 - 27479039
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| | ||||||||||  ||||  ||| ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27478963 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttgg 27479039  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 27486023 - 27486099
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| | ||||||||||  ||||  ||| ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27486023 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttgg 27486099  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 27497402 - 27497478
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| |||||||||| |  ||||||||| ||||| | ||||| ||||||||||| ||||||| ||| ||||||||    
T  27497402 ggttggtttaagtatgagatagggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttgg 27497478  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 27527221 - 27527145
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| |||||| |||||  ||||||||| ||||  ||||||| ||||||||||| || |||||||| ||||||||    
T  27527221 ggttggtttaagtgtgatattgggatcacaaaccgtttctgtttatctccaacatacaccgcaagatagccctttgg 27527145  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 27468402 - 27468481
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatcccttt 91  Q
    ||||||||||| ||||||||||||| ||||  ||| |||||  | |||||||||||||||| || |||| ||| ||||||    
T  27468402 atgaaggttggtttaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagcccttt 27468481  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 27500420 - 27500519
Alignment:
Q  19 ttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    |||| ||||||||||||  ||||||||| | ||| ||  ||||||||| || || ||||| |||||||| ||||| |||||||||| ||| |||| ||||    
T  27500420 ttggtttaagtatgatatagggatcacaaatcgcttcattttctctcctacgtacactgctagatatccttttggtacgtccacagattttgaagatgat 27500519  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 27526289 - 27526338
Alignment:
Q  132 atgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgt 181  Q
    |||||||| || ||||||||| ||  ||||||||||||||||||||||||    
T  27526289 atgatgcccttttgatgatactaggtaaacgaaaacccattgttgtatgt 27526338  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 27431223 - 27431307
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcac 96  Q
    |||| |||||| | ||||||||||  ||||||||| ||| | ||  ||  || |||||||||||||||| |||||||||||||||    
T  27431223 atgacggttggttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcac 27431307  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 27479952 - 27479860
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    ||||||||||| || |||||| | ||| ||  ||||||||| || |||||||| ||||| || ||||||||||||| | |||| |||| ||||    
T  27479952 aagtatgatacaggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttggcacgtccaaaccttttgaagatgat 27479860  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 27500527 - 27500571
Alignment:
Q  144 tgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaa 188  Q
    ||||||||| ||  ||||||||||||||||||||| |||||||||    
T  27500527 tgatgatactaggtaaacgaaaacccattgttgtacgtgttaaaa 27500571  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 27505791 - 27505883
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagctttcgaagctgat 118  Q
    ||||||||||| || |||||| ||||| ||  ||||||||| || || ||||| ||||| ||||||||||| |||| | |||| |||| ||||    
T  27505791 aagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttggcacctccaaaccttttgaagatgat 27505883  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 27516798 - 27516838
Alignment:
Q  144 tgatgataccagcaaaacgaaaacccattgttgtatgtgtt 184  Q
    ||||||||| ||  |||||||||||||||||||||||||||    
T  27516798 tgatgatactaggtaaacgaaaacccattgttgtatgtgtt 27516838  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 1756837 - 1756913
Alignment:
Q  17 ggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||| | ||||||||||  ||||||||| ||||| ||||||||||||||||||  ||||||||||| ||||||||    
T  1756837 ggttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttgg 1756913  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 1754330 - 1754406
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccac 102  Q
    ||||||||||||||||||||| ||||| ||  ||  |||||||||||||| || |||||||| |||||| |||||||    
T  1754330 aagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggctcgtccac 1754406  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 1754739 - 1754672
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    ||||||||||  |||||||||| |||  ||||||||||||||| ||| ||||||| ||| ||||||||    
T  1754739 aagtatgatattgggatcacatgccgtttctgtttctctccaatatacactgcaacatagccctttgg 1754672  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 38024964 - 38025046
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagcttt 108  Q
    |||||||| | |||||| ||| ||||| ||  || |||||||||||||||||||||||| |||||||| || | |||||||||    
T  38024964 aagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38025046  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 38031416 - 38031498
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagcttt 108  Q
    |||||||| | |||||| ||| ||||| ||  || |||||||||||||||||||||||| |||||||| || | |||||||||    
T  38031416 aagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38031498  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 50910025 - 50909941
Alignment:
Q  12 atgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcac 96  Q
    |||||| |||| | |||||||| | |||||| ||| |||||  |  || |||||||||||| ||||||||||| |||||||||||    
T  50910025 atgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcac 50909941  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 21607385 - 21607452
Alignment:
Q  26 aagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 93  Q
    |||||||| | |||||| ||| ||||| ||  || ||||||||||||||| |||||||||||||||||    
T  21607385 aagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttgg 21607452  T

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