View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_11 (Length: 285)
Name: NF11560_low_11
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 25493925 - 25493699
Alignment:
| Q |
12 |
aaaggagataaaagagattccggtaataaggatataaggggagaagacccacggggatgaagacttttgaagcatgacaaaacacaatatggagggaaaa |
111 |
Q |
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| T |
25493925 |
aaaggagataaaagagattccggtaataaggatataagggga---------------tgaagacttttgaagcatgacaaaacacaatatggagggaaaa |
25493841 |
T |
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| Q |
112 |
ggctatacaatgcacaaaagatcgaatactaactgtttctctacaaatcaaatcaaagtgatgagaataatataatagaaaatgaaaagagacgcaatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25493840 |
ggctatacaatgcacaaaagatcgaatactaactgtttctctacaaatcaaatcaaagtgatgagaataatataatagaaaatgaaaagagacgcaatga |
25493741 |
T |
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| Q |
212 |
attaaaatgtactcctattgtacatgaaagaagatttaaaag |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25493740 |
attaaaatgtactcctattgtacatgaaagaagatttaaaag |
25493699 |
T |
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