View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_12 (Length: 238)
Name: NF11560_low_12
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 27570530 - 27570751
Alignment:
| Q |
3 |
catatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattag |
102 |
Q |
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| T |
27570530 |
catatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattag |
27570629 |
T |
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| Q |
103 |
gaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttg |
202 |
Q |
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| T |
27570630 |
gaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttg |
27570729 |
T |
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| Q |
203 |
cgttcaacattcattatcttct |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
27570730 |
cgttcaacattcattatcttct |
27570751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 27412333 - 27412166
Alignment:
| Q |
3 |
catatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattag |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27412333 |
catatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattag |
27412234 |
T |
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| Q |
103 |
gaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
170 |
Q |
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| T |
27412233 |
gaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttacaaaaataaaa |
27412166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 27422880 - 27422677
Alignment:
| Q |
3 |
catatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattag |
102 |
Q |
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| T |
27422880 |
catatataagatcacatggtattgtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttcatatttgattag |
27422781 |
T |
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| Q |
103 |
gaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttg |
202 |
Q |
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| T |
27422780 |
gatggcagggatcgcaaagttttgttctggtatgcaaattttgtggagtctgtcatgcaaaaat---ataaaatgtggttcatagtggctcatgttcttg |
27422684 |
T |
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| Q |
203 |
cgttcaa |
209 |
Q |
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|||||| |
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| T |
27422683 |
tgttcaa |
27422677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 27415176 - 27415068
Alignment:
| Q |
71 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa |
170 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||| || | |||||| ||||| | |
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| T |
27415176 |
agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttg---taataata |
27415080 |
T |
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| Q |
171 |
taaaatgtggtt |
182 |
Q |
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|||||||||||| |
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| T |
27415079 |
taaaatgtggtt |
27415068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 27425423 - 27425324
Alignment:
| Q |
68 |
aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata |
167 |
Q |
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|||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| ||||||||| |
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| T |
27425423 |
aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaata |
27425324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 27566449 - 27566595
Alignment:
| Q |
39 |
accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca |
138 |
Q |
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|||| |||| ||||||| ||||| ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| ||||||||||| ||||||||| |
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| T |
27566449 |
accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca |
27566548 |
T |
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| Q |
139 |
aatatcatggagttggtcttgcaaaaataaaataaaatgtggtttata |
186 |
Q |
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| T |
27566549 |
aatttaatggaatttgtcctg-aaaaactatataaaatgtggtttata |
27566595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
| Q |
71 |
agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg |
147 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| |||||||||||| |
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| T |
27419963 |
agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg |
27419887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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