View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_13 (Length: 238)
Name: NF11560_low_13
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13022185 - 13022407
Alignment:
| Q |
1 |
atggttttgaggagggaaatcacttctatcgattccttgaacatgaaccgtttatctcaaaatgtttcaatttccgtggtgctacagatgatagtgaacc |
100 |
Q |
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| T |
13022185 |
atggttttgaggagggaaatcacttctatcgattccttgaacatgaaccgtttatctcaaaatgtttcaatttccggggtgctacaaatgatagtgaacc |
13022284 |
T |
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| Q |
101 |
gaaaagtgcagctgcagtttgtgatagacttaccaagattatgtatgccattcttgagtcttatgcttctgaagataggagacatgttgattatgtggcc |
200 |
Q |
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| T |
13022285 |
gaaaagtgcagctgcagtttgtgatagacttaccaagattatgtatgccattcttgagtcttatgcttctgaagataggagacatgttgattatgtggcc |
13022384 |
T |
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| Q |
201 |
atcagc-aaagtgaagaatttag |
222 |
Q |
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|||||| |||||||||||||||| |
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| T |
13022385 |
atcagcaaaagtgaagaatttag |
13022407 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 12832804 - 12832994
Alignment:
| Q |
5 |
ttttgaggagggaaatcacttctatcgattccttgaacatgaaccgtttatctcaaaatgtttcaatttccgtggtgctacagatgatagtgaaccgaaa |
104 |
Q |
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|||||| || |||||||| || ||||| ||| |||| |||||||| |||||| ||||| || ||||| || ||||| | |||| | |||||| || |
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| T |
12832804 |
ttttgaagatggaaatcatttgtatcgtttcgttgagcatgaaccctttatccacaaatgctttaattttcgcggtgccgtaaatgacaatgaaccaaag |
12832903 |
T |
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| Q |
105 |
agtgcagctgcagtttgtgatagacttaccaagattatgtatgccattcttgagtcttatgcttctgaagataggagacatgttgattatg |
195 |
Q |
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| T |
12832904 |
acagcagctttaatttgtgacaggctaactaagattatgtctgccattcttgagtcttatgcttctgatgatagaaaacatgttgattatg |
12832994 |
T |
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