View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_14 (Length: 229)
Name: NF11560_low_14
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2096543 - 2096771
Alignment:
| Q |
1 |
acctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatggactgaaattacaacctcc |
100 |
Q |
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| T |
2096543 |
acctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatgaactgaaattacaacctcc |
2096642 |
T |
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| Q |
101 |
attattacgaaatcaaataagtgtttttagtgcttataataaatttcagcaagagaaggtcttgtaaaaacgcataaaacataatcagaacgaagccatc |
200 |
Q |
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| T |
2096643 |
attattacgaaatcaaataagtgtttttagtgcttataataaatttaagcaagagaaggtcttgtaaaaacgcataaaacataatcagaacgaagccatc |
2096742 |
T |
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| Q |
201 |
tattaagtttacctttcatgtactacaat |
229 |
Q |
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| T |
2096743 |
tattaagtttacctttcatgtactacaat |
2096771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2102755 - 2102908
Alignment:
| Q |
1 |
acctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatggactgaaattacaacctcc |
100 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||| |
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| T |
2102755 |
acctgccgaagctaaaggatagcttttaggtatcaagaagcaatacctgcatatgcaagaccaaatataaaagaagttatgaactgaaattacaacttcc |
2102854 |
T |
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| Q |
101 |
attattacgaaatcaaataagtgtttttagtgcttataataaatttcagcaaga |
154 |
Q |
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| T |
2102855 |
atcgttatgaaatcaaagatgtttttttagtgctcataataaatttcagcaaga |
2102908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 2102908 - 2102956
Alignment:
| Q |
181 |
ataatcagaacgaagccatctattaagtttacctttcatgtactacaat |
229 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| ||||||||| |
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| T |
2102908 |
ataatcagaaccaagccctctattaagtttacctttcatttactacaat |
2102956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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