View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_15 (Length: 227)
Name: NF11560_low_15
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6354255 - 6354472
Alignment:
| Q |
1 |
ggatcggaataggaaatgttgagtgtgtgggtcccacacgaggggttcatgatggaggttgagtcaccggaagttgatcgcttgagtcttatgagagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6354255 |
ggatcggaataggaaatgttgagtgtgtgggtcccacacgaggggttcatgatggaggttgagtcaccggaagttgatggcttgagtcttatgagagaaa |
6354354 |
T |
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| Q |
101 |
-tatacggtttaatacaatggtgatggtagaattttcatgatattacactatgattcctatctagtccagtccagtaattgatagaaagcttatactagg |
199 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6354355 |
atatatggtttaatacaatggtgatgctagaattttcatgatattacactatgattcctatctagtccagtccagtaattgatagaaagcatatactagg |
6354454 |
T |
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| Q |
200 |
ttgtgttttgtgttcatc |
217 |
Q |
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|||||||||||||||||| |
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| T |
6354455 |
ttgtgttttgtgttcatc |
6354472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 8491944 - 8491728
Alignment:
| Q |
1 |
ggatcggaataggaaatgttgagtgtgtgggtcccacacgaggggttcatgatggaggttgagtcaccggaagttgatcgcttgagtcttatgagagaaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8491944 |
ggatcggaatcggaaatgttgagtgtgtgggtcccacaagaggggttcatgatggaggttgagtcaccggaagttgatcgcttgagtcttatgagagaaa |
8491845 |
T |
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| Q |
101 |
tatacggtttaatacaatggtgatggtagaattttcatgatattacactatgattcctatctagtccagtccagtaattgatagaaagcttatactaggt |
200 |
Q |
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| T |
8491844 |
tatatggtttaatacaatggtgatgctagaattttcatgatattacactatgattcctatctagtccactccagtaattgatagaaagcatatactaggt |
8491745 |
T |
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| Q |
201 |
tgtgttttgtgttcatc |
217 |
Q |
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| T |
8491744 |
tgtgttttgtgttcatc |
8491728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 5005871 - 5005804
Alignment:
| Q |
98 |
aaatatacggtttaatacaatggtgatggtagaattttcatgatattacactatgattcctatctagt |
165 |
Q |
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||||||| |||||||||||||||||||| || ||||| |||||||||||| |||||||| |||||||| |
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| T |
5005871 |
aaatatatggtttaatacaatggtgatgctaaaatttacatgatattacagtatgattcatatctagt |
5005804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 26836741 - 26836684
Alignment:
| Q |
108 |
tttaatacaatggtgatggtagaattttcatgatattacactatgattcctatctagt |
165 |
Q |
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|||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||| |
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| T |
26836741 |
tttaatacaatggtgatgctaaaatttacatgatattacaatatgattcctatctagt |
26836684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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