View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_2 (Length: 1059)
Name: NF11560_low_2
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 28601155 - 28601510
Alignment:
| Q |
10 |
aggagcagagagtaatggagcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagtt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601155 |
aggaccagagagtaatggagcacatatcccagaagagttacaaacaacgttgtttgtgtccttcaaggatgcagtattattcacctttttcctaatagtt |
28601254 |
T |
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| Q |
110 |
gcaacactgaatgtatttaagtgtgtgcatccttataccagaatgtattggctctttgctttcaaaataaataatctctaactaggagtgcttctaagtg |
209 |
Q |
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| T |
28601255 |
gcaacactgaatgtatttaagtgtgtgcatccttataccagaatgtattggctgtttgctttcaaaataaataatctctaactaggagtgcttctaagtg |
28601354 |
T |
|
| Q |
210 |
cattaattaattcatgttttccttactccgtttcatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttat |
309 |
Q |
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| T |
28601355 |
cattaattaattcatgttttccttactccgtttgatgatatccatggcttatttatcatgtctccatagtaagattactaacactgaagaacagagttat |
28601454 |
T |
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| Q |
310 |
caaattcaggctccaccaactaagtattctcaaacttaaattgataacgatcgagg |
365 |
Q |
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| T |
28601455 |
caaattcaggctccaccaactaagtattctcaaacttaaattgataacgatcgagg |
28601510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 752 - 1045
Target Start/End: Original strand, 28601880 - 28602185
Alignment:
| Q |
752 |
ttacgccaacacaaagccacatcgtcaccgcaacattcacggtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcg |
851 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601880 |
ttacaccaacacaaagccacatcgtcatcgcaacattcacagtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcg |
28601979 |
T |
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| Q |
852 |
aattaatcacagtctcatacacgataata--acacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgac |
949 |
Q |
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| T |
28601980 |
aattaatcacagtctcatacacgataataacacacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgac |
28602079 |
T |
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| Q |
950 |
atttccaacaaatgatac----------taacagttatgttccattacatcattgacatgaaacaaaggattaaaatgcatgggaaagtcattttcagta |
1039 |
Q |
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| T |
28602080 |
atttccaacaaatgatactcatttatcttaacagttatgttccattacatcattgacatgaaacaaaggattaaaatgcatgggaaagtcattttcagta |
28602179 |
T |
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| Q |
1040 |
tcttgt |
1045 |
Q |
| |
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|||||| |
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| T |
28602180 |
tcttgt |
28602185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 362 - 528
Target Start/End: Original strand, 28601549 - 28601716
Alignment:
| Q |
362 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601549 |
gagggtaatgatctgatgtagtagtcgttagacattccaacctcgcatccggaaataagttgcaccaattatcatttgtcatagctcaatctagtttccc |
28601648 |
T |
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| Q |
462 |
ttctactatcagattcattccaagacttttgaaccaagtgcacgggtat-ccttcatctgaatatcaa |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28601649 |
ttctactatcagattcattccaagacttttgaaccaagtgcacgggtatccctccatctgaatatcaa |
28601716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 524 - 647
Target Start/End: Original strand, 28601755 - 28601878
Alignment:
| Q |
524 |
atcaactaattgatgcggtcagctcttcctttcttctcatcaaatgagagaatatcattgaaattccctatatataacaagaaaattgagaagtttttga |
623 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601755 |
atcaactaattgatgcgatcaactcttcctttcttctcatcaaatgagagaatatcattgaaattccctatatataacaagaaaattgagaagtttttga |
28601854 |
T |
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| Q |
624 |
atgttgtctcaacaaatttcatga |
647 |
Q |
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|||||||||||||||||| ||||| |
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| T |
28601855 |
atgttgtctcaacaaattccatga |
28601878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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