View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_3 (Length: 634)
Name: NF11560_low_3
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 615
Target Start/End: Complemental strand, 40648987 - 40648388
Alignment:
| Q |
16 |
aaatagatgtagatattcataactgatattagctaaattatgtccaagaaatccttattgctataattttactgtttaatccctgttcaattactctttt |
115 |
Q |
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| T |
40648987 |
aaatagatgtagatattcataactgatattagctaaattatgtccaagaaatccttattgctataattttactgtttaatccctgttcaattactctttt |
40648888 |
T |
|
| Q |
116 |
tatcaggaagagttaacatcattactggtcctaacttttctgggaagagtatctatataaaacaggtgtttagttattattctttatattcctagaatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648887 |
tatcaggaagagttaacatcattactggtcctaacttttctgggaagagtatctatataaaacaggtgtttagttattattctttatattcctagaatat |
40648788 |
T |
|
| Q |
216 |
gtattctcttctctatggcatttgtatttattgtttcgattagcaataatgttgaagaggcaggccatcttctttttaacctctatttgtaatattcaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40648787 |
gtattctcttctctatggcatttgtatttattgtttcgaatagcaataatgttgaagaggcaggccatcttctttttaacctctatttgtaatgttcaaa |
40648688 |
T |
|
| Q |
316 |
taatgtttcagaactattgtttttagcgttatgtgtatcaatgctggttgttattattcatctgatctgacaactctaaaagttacatttgcaaacagtt |
415 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40648687 |
taatgtttcagaactattgtttttagtgttacgtgtatcaatgctggttgttgttattcatctgatctgacaactctaaaagctacatttgcaaacagtt |
40648588 |
T |
|
| Q |
416 |
tatgaatcttggaacagaaaagtccattgcagtccgaaattactgatcctatataaatatcatagtatgatagataaaatcccagaagaattactggctc |
515 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648587 |
tatgaatcttggaacagaaaagtccattgcagtctgaaattactgatcctatataaatctcatagtatgatagataaaatcccagaagaattactggctc |
40648488 |
T |
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| Q |
516 |
ctatataccaatttaacaagtgataaatacaaattaaagaattttttactggtttgcaggtcacacatctctctgttttatcataagtgttatgtatttt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40648487 |
ctatataccaatttaacaagtgataaatacaaattaaagaattttttactggtttgcaggtcacacatctctctgttttatcataagtgttatgtatttt |
40648388 |
T |
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