View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_4 (Length: 464)
Name: NF11560_low_4
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 34756770 - 34756342
Alignment:
| Q |
16 |
actttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatttccataaaa |
115 |
Q |
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| T |
34756770 |
actttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatttccataaaa |
34756671 |
T |
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| Q |
116 |
gaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccattcagaccagtttgttgcaaaaggagaattga |
215 |
Q |
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| T |
34756670 |
gaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccatccagaccagtttgttgcaaaaggagaattga |
34756571 |
T |
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| Q |
216 |
ccatgcacttgaagttgatatatgatattgcattgcttctnnnnnnnnttactcagacaaaggtaattcattttttgggcacaaagaaaatgaaggacta |
315 |
Q |
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| T |
34756570 |
ccatgcacttgaagttgatatatgatattgcattgcttctaaaaaaaattactcagacaaaggtaattcattttttgggcacagagaaaatgaaggacta |
34756471 |
T |
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| Q |
316 |
acagccagaacatacacaaaattgaaaggttgaaatcaaaagacgtattggtttatgaacggccagatgaataagaagaaagtgagaaattcattcaaca |
415 |
Q |
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| T |
34756470 |
acagccagaacatacac--aattgaaaggttgaaatcaaaagacgtattggtttatgaacggccagatgaataagaagaaagtgagaaattcattcaaca |
34756373 |
T |
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| Q |
416 |
aaatgatacatgaaaaagagaatagttgtct |
446 |
Q |
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| T |
34756372 |
aaatgatacatgaaaaagagaatagctgtct |
34756342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 34755129 - 34755043
Alignment:
| Q |
268 |
tcagacaaaggtaattcattttttgggcacaaagaaaatgaaggactaacagccagaacatacacaaaattgaaaggttgaaatcaaa |
355 |
Q |
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| T |
34755129 |
tcagacaaaagtcattc-ttttgtgggcacaaagaaaatgaaggcccaacaactggaacatacacaagattgaaaagttgaaatcaaa |
34755043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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