View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_5 (Length: 422)
Name: NF11560_low_5
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 11150228 - 11149828
Alignment:
| Q |
18 |
aagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagac |
117 |
Q |
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| T |
11150228 |
aagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagac |
11150129 |
T |
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| Q |
118 |
atgtgttctgtccgacactgatacggcgctgacacatatat--ttacattgaattatgccaccttttcaaaatattagcgggttggtgtattagtgtaca |
215 |
Q |
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| T |
11150128 |
atgtgttctgtccgacactgatacgacactgacacatatatatttacattgaattatgcgaccttttcaaaatattagcgggttggtgtattagtgtaca |
11150029 |
T |
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| Q |
216 |
tatcgtatctggtgtctgtatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagccataaaatcattgcttggttt |
315 |
Q |
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| T |
11150028 |
tatcgtatctgatgtctctatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagccataaaatcattgcttggttt |
11149929 |
T |
|
| Q |
316 |
catggatgtggataaattccacaaactgctctcttacaactgcaatgg------tagagactaaagagagccctttggtcatttgggtgtgtggtgaatc |
409 |
Q |
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| T |
11149928 |
catggatgtggataaattccacaaactgctctcttacaactgcaaaggtagagatagagactagagagagccctttggtcatttgggtgtgtggtgaatc |
11149829 |
T |
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| Q |
410 |
t |
410 |
Q |
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| T |
11149828 |
t |
11149828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 29655927 - 29655975
Alignment:
| Q |
90 |
tcagattaggcgtatttcggtatcagacatgtgttctgtccgacactga |
138 |
Q |
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| T |
29655927 |
tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactga |
29655975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
| Q |
82 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacac |
135 |
Q |
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| T |
28524544 |
gacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacac |
28524491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 35056986 - 35056896
Alignment:
| Q |
82 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacatatatttacattgaattat |
172 |
Q |
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|||||| |||||||||||||| |||| || || |||| |||| |||||||||| || ||| | | |||||||||| ||||| |||||||| |
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| T |
35056986 |
gacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat |
35056896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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