View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11560_low_6 (Length: 412)

Name: NF11560_low_6
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11560_low_6
NF11560_low_6
[»] chr8 (11 HSPs)
chr8 (25-335)||(43539752-43540071)
chr8 (155-335)||(43539096-43539276)
chr8 (160-335)||(59548-59723)
chr8 (162-335)||(35675612-35675785)
chr8 (184-333)||(60168-60313)
chr8 (157-289)||(35178802-35178934)
chr8 (355-400)||(43539688-43539733)
chr8 (217-309)||(28524811-28524903)
chr8 (161-309)||(32898423-32898571)
chr8 (302-335)||(35676373-35676406)
chr8 (158-254)||(2552008-2552104)
[»] chr4 (9 HSPs)
chr4 (161-335)||(29980200-29980373)
chr4 (162-335)||(39267720-39267892)
chr4 (163-335)||(29978833-29979007)
chr4 (162-335)||(39268803-39268975)
chr4 (220-309)||(21623095-21623184)
chr4 (211-309)||(21621870-21621968)
chr4 (232-275)||(32244700-32244743)
chr4 (217-273)||(2786274-2786330)
chr4 (245-309)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (160-288)||(26652603-26652731)
chr3 (152-335)||(27823717-27823900)
chr3 (217-312)||(40206912-40207008)
chr3 (156-289)||(17700510-17700643)
chr3 (262-335)||(30270735-30270808)
chr3 (232-305)||(40205950-40206023)
chr3 (161-226)||(47118112-47118177)
chr3 (157-298)||(48572978-48573119)
chr3 (161-289)||(17701917-17702045)
chr3 (162-205)||(20464543-20464586)
chr3 (161-307)||(52318297-52318443)
chr3 (232-268)||(40317838-40317874)
[»] chr7 (13 HSPs)
chr7 (162-335)||(8484158-8484331)
chr7 (152-335)||(8077545-8077731)
chr7 (160-280)||(8075482-8075601)
chr7 (162-309)||(48646047-48646194)
chr7 (158-309)||(35727693-35727843)
chr7 (161-308)||(7258272-7258419)
chr7 (166-205)||(48788754-48788793)
chr7 (166-309)||(44333141-44333282)
chr7 (245-312)||(384934-385001)
chr7 (159-205)||(385693-385739)
chr7 (160-206)||(21062813-21062859)
chr7 (161-205)||(10899155-10899199)
chr7 (218-274)||(24844627-24844683)
[»] chr2 (9 HSPs)
chr2 (161-289)||(32766237-32766365)
chr2 (166-309)||(31091505-31091648)
chr2 (161-274)||(8420010-8420123)
chr2 (159-275)||(12746213-12746329)
chr2 (217-309)||(15441949-15442041)
chr2 (217-305)||(38853808-38853896)
chr2 (164-196)||(5428361-5428393)
chr2 (157-205)||(14705129-14705177)
chr2 (161-309)||(32764935-32765082)
[»] chr5 (11 HSPs)
chr5 (157-274)||(9538062-9538179)
chr5 (157-205)||(24900414-24900462)
chr5 (166-309)||(4592863-4593006)
chr5 (166-273)||(8074453-8074560)
chr5 (166-309)||(19182952-19183095)
chr5 (238-305)||(19271416-19271483)
chr5 (160-202)||(16978988-16979030)
chr5 (166-236)||(28591165-28591235)
chr5 (160-205)||(14891225-14891270)
chr5 (163-256)||(23772809-23772902)
chr5 (217-305)||(26327054-26327142)
[»] chr1 (5 HSPs)
chr1 (220-305)||(50107185-50107270)
chr1 (161-275)||(11060796-11060910)
chr1 (160-309)||(7945532-7945681)
chr1 (217-274)||(1001207-1001264)
chr1 (257-309)||(534517-534569)
[»] chr6 (1 HSPs)
chr6 (162-274)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 43540071 - 43539752
Alignment:
Q  25 atgcatatttgtcggtcaacatccatttgatataatgacgtattcatgggcacctttgtttgtannnnnnncca---------gaaggtattatgtgttt 115  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||       |||         |||||||||||||||||    
T  43540071 atgcatatttgtcagtcaacatccatttgatataatgacatattcatgggcacctttgtttgtatttttttccaacaggttttgaaggtattatgtgttt 43539972  T
Q  116 gaagtgtccctacctaaatttgtgttgctctttatgaataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccc 215  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  43539971 gatgtgtccctacctaaatttgtgttgctctttatgaataatttttgagtaaatagacactttggtccctgactttgcacctcgctgtcattttagtccc 43539872  T
Q  216 cgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatc 315  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43539871 ctactcaggataaactacaaaatagtccttgaatatgcacatctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtcaatc 43539772  T
Q  316 atagggaccaaattgaaagt 335  Q
    ||||||||||||||||||||    
T  43539771 atagggaccaaattgaaagt 43539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 155 - 335
Target Start/End: Original strand, 43539096 - 43539276
Alignment:
Q  155 aatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 254  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  43539096 aattattgagtaaatagtcactttggtccctaactttgcacctcgctgtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgta 43539195  T
Q  255 catctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
     |||||||||||||||| ||||||||||||||||| | ||||||||   ||||||||||| ||||||||||||||||||||    
T  43539196 tatctgttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 160 - 335
Target Start/End: Original strand, 59548 - 59723
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 259  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatct 59647  T
Q  260 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    || |||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  59648 gtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 162 - 335
Target Start/End: Original strand, 35675612 - 35675785
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| || |||||| || ||||||||    
T  35675612 gagttaatagtcattttggtcgttgactttgcacctcgctatcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgt 35675711  T
Q  262 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||| | ||||||||||||||||  | |||||| | ||||||||||||| |||| ||||||||| |||||    
T  35675712 tatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagaccaaattaaaagt 35675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 333
Target Start/End: Complemental strand, 60313 - 60168
Alignment:
Q  184 ttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgtt 283  Q
    |||||||||||||||| ||||| ||| |||||    ||||||||||||||| |||||||| |||||||| | | ||||||||||| ||||| ||||| ||    
T  60313 ttgactttgcacctcgttgtcactttggtccc----tcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttaccttt 60218  T
Q  284 aaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaa 333  Q
    |||||  | ||||||||  |||||||||| ||||||||||||||||||||    
T  60217 aaaaatttctgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 35178934 - 35178802
Alignment:
Q  157 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 256  Q
    |||| ||| |||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||| || ||||||  ||||| ||| | |||||     
T  35178934 ttttcgagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcact 35178835  T
Q  257 tctgttatcagtttagtccttaccgttaaaaaa 289  Q
    || ||||||| |||||||| |  ||||||||||    
T  35178834 tccgttatcactttagtccctgacgttaaaaaa 35178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 43539733 - 43539688
Alignment:
Q  355 attaatgataaaaaaccaaataaagaatatttatcaccttcatctc 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  43539733 attaatgataaaaaaccaaaaaaagaatatttatcaccttcatctc 43539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 28524811 - 28524903
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| |||||||  |  ||||||| || | |||||||| ||||||||    
T  28524811 gactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtg 28524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 32898571 - 32898423
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||| ||||||||||||| |||| ||||| |||| ||| ||||||  |  ||||| |||| ||||| || ||||||  ||||| ||| | ||||| || |    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |||||| |||||||| |  |||||||||| | |||||| | ||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 32898423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  302 atgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 2552008 - 2552104
Alignment:
Q  158 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 254  Q
    ||||||||||||  ||| ||||||| ||||||||| || ||||||| ||   ||||   |||||||||| || |||||| || ||||||||||||||    
T  2552008 ttttgagtaaatgatcattttggtctttgactttgtacgtcgctgttatcaaagtctttgactcaggattaaatacaaagtaatccttgaatgtgca 2552104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 335
Target Start/End: Complemental strand, 29980373 - 29980200
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | || ||    
T  29980373 tgagtaaatagtcactttgatcct-gactttacacctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttg 29980275  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||||||||| |||||||||||||| | ||||| ||  | |||||||||| ||||| |||||  |||||||    
T  29980274 ttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtcaattataggaaccaatctgaaagt 29980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 162 - 335
Target Start/End: Original strand, 39267720 - 39267892
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| || |||| |||| | |||||||| ||||| | ||| | |||||||| ||||||||    
T  39267720 gagtaaatagtcattttattcct-gactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgt 39267818  T
Q  262 tatcagtttagtccttaccgttaaaaaacta-tgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||| ||||||| |||||| |||||||||||||    
T  39267819 tatcagtttagtccttaccgtt-aataactaccgttaaatgatgatatgtcaataataggggccaaattgaaagt 39267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 335
Target Start/End: Original strand, 29978833 - 29979007
Alignment:
Q  163 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagt-ccccgactcaggataaactac-aaaatagtccttgaatgtgcacatctg 260  Q
    |||||||||||| |||||| | ||||||| ||| ||| ||||| |||||| |||||||| | ||| || ||| |||||||||  ||||  |  |||| ||    
T  29978833 agtaaatagtcattttggttcctgactttacacttcgttgtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttg 29978932  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    ||||||||||| ||||||||||||||||  | |||||||||| ||||||| ||| | ||||||||||||||||||    
T  29978933 ttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 335
Target Start/End: Complemental strand, 39268975 - 39268803
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    ||||||||| ||||||| || | ||| ||| || |||||||||| ||||||| ||||||| | ||||| ||||| | ||| | |||| ||| |  |||||    
T  39268975 gagtaaataatcactttagttcctgattttacatctcgctgtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgt 39268876  T
Q  262 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    ||||||||||||  ||||||||| |||||| |||||  |  ||||||||||||| || ||||||||||||||||    
T  39268875 tatcagtttagtttttaccgtta-aaaactctgttacatggtgatgtgtcaatcctaaggaccaaattgaaagt 39268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 21623184 - 21623095
Alignment:
Q  220 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||    ||||||| || |||||||||| ||||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtg 21623095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 21621870 - 21621968
Alignment:
Q  211 gtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||| |   |||||| || |||||||||| ||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtg 21621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 32244743 - 32244700
Alignment:
Q  232 acaaaatagtccttgaatgtgcacatctgttatcagtttagtcc 275  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  32244743 acaaagtagtccttgaatgtgcacatccgttatcactttagtcc 32244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 2786274 - 2786330
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt 273  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| ||||||    
T  2786274 gactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 24753603 - 24753539
Alignment:
Q  245 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||| || | |||||||| ||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgtg 24753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 26652731 - 26652603
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 259  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||| |  |||    
T  26652731 ttgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctct 26652632  T
Q  260 gttatcagtttagtccttaccgttaaaaa 288  Q
    |||||||||||||||||||| ||||||||    
T  26652631 gttatcagtttagtccttactgttaaaaa 26652603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 335
Target Start/End: Original strand, 27823717 - 27823900
Alignment:
Q  152 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 251  Q
    |||||||| |||| ||||||||| |||  ||||||| ||| |||||  ||||||||||| || ||||  ||||||||| ||||| | |||| ||||||||    
T  27823717 aataatttatgaggaaatagtcattttaatccttgattttacacctaactgtcattttaatctccgatccaggataaaatacaataaagtctttgaatgt 27823816  T
Q  252 gcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
      |  ||||||||| ||||||| ||||||||||||||  | |||||| |  |||||||||||| ||| ||| ||||||||||||    
T  27823817 ctatctctgttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggatcaaattgaaagt 27823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 40207008 - 40206912
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt-ccttaccgttaaaaaactatgttaactcatgatgtgtca 312  Q
    |||||| ||| || || ||| |||||||||||||||||  || |||||||||||||| ||||| |||||||||| |||||||||| |||| ||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaactgatgaggtgtca 40206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 17700510 - 17700643
Alignment:
Q  156 atttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcac 255  Q
    ||||| ||| ||||||||||||| ||| |||||| ||||||||| |||||  |  || || |||||||||| || ||||||  ||||| ||| | |||||    
T  17700510 attttagagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcac 17700609  T
Q  256 atctgttatcagtttagtccttaccgttaaaaaa 289  Q
     || ||||||| |||||||| |  ||||||||||    
T  17700610 ttccgttatcactttagtccctgacgttaaaaaa 17700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 30270735 - 30270808
Alignment:
Q  262 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||||| || ||||||||||| |  | ||||||||  |||||||||||||||| |||||||||| |||||    
T  30270735 tatcagtttaatctttaccgttaaacacttctgttaactggtgatgtgtcaatcataaggaccaaattaaaagt 30270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 40205950 - 40206023
Alignment:
Q  232 acaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 305  Q
    ||||| |||||  ||||||||||| || ||||||||||||||| ||  |||||||||| |||||||||| ||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 47118177 - 47118112
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggat 226  Q
    |||| |||| |||||||| |||| ||||| ||||||||| |||||| | |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggat 47118112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 298
Target Start/End: Original strand, 48572978 - 48573119
Alignment:
Q  157 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 256  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| | |||  |  ||||| |||||||||| || ||||||  || |  ||| | |||||     
T  48572978 ttttttagcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcact 48573077  T
Q  257 tctgttatcagtttagtccttaccgttaaaaaactatgttaa 298  Q
    || ||||||| ||||||||||  |||||||||| | ||||||    
T  48573078 tccgttatcactttagtccttgacgttaaaaaaatttgttaa 48573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 17702045 - 17701917
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||||||||||||||||| |||  ||| | |||| ||||||||||| |  ||||| |||||| ||| || ||||||  ||||| ||| | ||||| || |    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  261 ttatcagtttagtccttaccgttaaaaaa 289  Q
    |||||| |||||||| |  ||||||||||    
T  17701945 ttatcactttagtccctgacgttaaaaaa 17701917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 307
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||  |   |||| |||||||||| || ||||||  ||||| ||| | ||||| ||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatg 307  Q
     ||| | |||||||| |  |||||||||| | |||||| | ||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 40317838 - 40317874
Alignment:
Q  232 acaaaatagtccttgaatgtgcacatctgttatcagt 268  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40317838 acaaagtagtccttgaatgtgcacttctgttatcagt 40317874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 162 - 335
Target Start/End: Complemental strand, 8484331 - 8484158
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||| | |||| ||||||| | ||||||||| |||||||||| |||||||| | || |||    
T  8484331 gagtaaatagtcactttggtctctgattttgcacctcgttgtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgt 8484232  T
Q  262 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    |||||||||||| |||||||||||||   | |||||||    |||||||||||||||||||| |||||||||||    
T  8484231 tatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 152 - 335
Target Start/End: Complemental strand, 8077731 - 8077545
Alignment:
Q  152 aataatttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgt 251  Q
    |||||||| |||||||||||||| ||||||||   ||||| ||||||| ||||| ||||||| ||||||||||||||| || |||||| |   |||||||    
T  8077731 aataatttatgagtaaatagtcattttggtccccaactttacacctcgttgtcactttagtctccgactcaggataaattataaaataatttctgaatgt 8077632  T
Q  252 gcacatctgttatcagtttagtcctt---accgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 335  Q
    | | |||||||||| |||||||||||   |||||| ||||| |||||||||   ||||||||||||||||| ||||||||| |||||    
T  8077631 gtagatctgttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 8075482 - 8075601
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 259  Q
    |||||||||||||||||| ||||||||||||| ||||  | ||| | ||||||| |||||| | |||||||||||||||| |||||||||||| | ||||    
T  8075482 ttgagtaaatagtcactt-ggtccttgactttacaccatgttgttactttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatct 8075580  T
Q  260 gttatcagtttagtccttacc 280  Q
    |||||||||||||||||||||    
T  8075581 gttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 48646047 - 48646194
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | | ||| || ||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  262 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    ||||| |||||||  |  |||||||||| ||| |||| | ||||||||    
T  48646147 tatcactttagtctctgtcgttaaaaaaatatattaagtgatgatgtg 48646194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 309
Target Start/End: Original strand, 35727693 - 35727843
Alignment:
Q  158 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 257  Q
    ||||||| ||| |||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || || |||  ||||  ||| | |||||||    
T  35727693 ttttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacat 35727792  T
Q  258 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    | ||||||| ||||||||| | ||||||||| || |||||| | ||||||||    
T  35727793 ccgttatcactttagtcctga-cgttaaaaatctctgttaagtgatgatgtg 35727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||| |||||||||||||||||| ||||| | ||||||| |||||  |  |||||  ||||||||| || ||||||  ||||  ||| | ||||| ||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgt 308  Q
    |||||| |||||||| |  |||||||||| | |||||| | |||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 48788793 - 48788754
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtca 48788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 44333141 - 44333282
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 265  Q
    |||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||| ||| || ||||||  ||||  ||| | ||||| || ||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  266 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |   ||||||||  |||||||||| | |||||| | ||||||||    
T  44333241 a--ctagtccttgacgttaaaaaaatctgttaagtgatgatgtg 44333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 384934 - 385001
Alignment:
Q  245 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtca 312  Q
    ||||||||||| || ||| |||||||||||  ||||||||||||| ||||||| || |||| ||||||    
T  384934 tgaatgtgcacttccgttctcagtttagtctctaccgttaaaaaattatgttagctaatgaggtgtca 385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 385739 - 385693
Alignment:
Q  159 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    ||||||||||| ||||||||||||||||||| |||| |||| |||||    
T  385739 tttgagtaaatggtcactttggtccttgactctgcatctcgttgtca 385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 21062813 - 21062859
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcat 206  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  21062813 ttgagaaaatggtcactttagtccctgactttgcacctcgctgtcat 21062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 10899199 - 10899155
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||    
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtca 10899155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 24844627 - 24844683
Alignment:
Q  218 actcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 274  Q
    ||||||||| || |||||| ||||| |||||||||||| ||  ||||||||||||||    
T  24844627 actcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 32766365 - 32766237
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  261 ttatcagtttagtccttaccgttaaaaaa 289  Q
    |||||| ||||||||||  ||||||||||    
T  32766265 ttatcactttagtccttgacgttaaaaaa 32766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 31091648 - 31091505
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 265  Q
    |||||||||||||||||| ||||| ||||||| |||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  266 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    | |||||||  |  |||||||||| |||||||| | ||||||||    
T  31091548 actttagtctctgacgttaaaaaaatatgttaagtgatgatgtg 31091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    ||||||||| ||||||||||||| ||||| ||||  |||| ||||     ||||| || ||| ||| || |||||| |||||| ||||||||||| ||||    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  261 ttatcagtttagtc 274  Q
    ||||||||||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 12746329 - 12746213
Alignment:
Q  159 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatc 258  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||| |    || || |||||||||| || |||||| |||| | ||||||||| | ||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttc 12746230  T
Q  259 tgttatcagtttagtcc 275  Q
     ||||||| ||||||||    
T  12746229 cgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 15442041 - 15441949
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |||||||||| || |||||| |||||||||||||||||| | | |||||| |||||||  ||  |||||| || | |||||||| ||||||||    
T  15442041 gactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaactgatgatgtg 15441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 38853808 - 38853896
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 305  Q
    |||||||||| || |||||| |||||| | ||||||||| || ||||||| |||||||  |  ||||||| || |||||||||||||||    
T  38853808 gactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 5428361 - 5428393
Alignment:
Q  164 gtaaatagtcactttggtccttgactttgcacc 196  Q
    |||||| ||||||||||||||||||||||||||    
T  5428361 gtaaatggtcactttggtccttgactttgcacc 5428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 14705177 - 14705129
Alignment:
Q  157 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    |||| ||| ||||||||||||||||||  |||| |||||||||||||||    
T  14705177 ttttagagcaaatagtcactttggtcccggactctgcacctcgctgtca 14705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 309
Target Start/End: Original strand, 32764935 - 32765082
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    |||||||||||||||||| |||| ||| | |||| || | |||||| |  ||| | |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  261 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |||||| |||| ||| |  |||||||||| |||||||| | ||||||||    
T  32765035 ttatcactttaatccctgacgttaaaaaa-tatgttaagtgatgatgtg 32765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 9538179 - 9538062
Alignment:
Q  157 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 256  Q
    |||| ||| |||||||||||||||||| ||||| |||| |||| |||||| |  ||||| |||||||||| || ||||||  ||||  ||| |||||||     
T  9538179 ttttagagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcact 9538080  T
Q  257 tctgttatcagtttagtc 274  Q
    || ||||||| |||||||    
T  9538079 tccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 24900462 - 24900414
Alignment:
Q  157 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  24900462 tttttgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 4592863 - 4593006
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 265  Q
    ||||||||||||| |||| ||| | || | ||||||||||  | |||||| |||||| ||| || ||||||  ||||| ||| | ||||| || ||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  266 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    | |||||||| |  |||||||||| | |||||| | ||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 4593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 8074453 - 8074560
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 265  Q
    ||||||||||||| |||| ||| | |||| ||||||||||  | |||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  266 agtttagt 273  Q
    | ||||||    
T  8074553 actttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 19182952 - 19183095
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 265  Q
    ||||||| ||||| |  |||||||||||||||||||||||  |  ||| | |||||||||| || ||||||  ||| | ||| | | ||| || ||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatc 19183051  T
Q  266 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    | |||||||||| |  |||||||| |||||||| | ||||||||    
T  19183052 actttagtccttgcgattaaaaaaatatgttaagtgatgatgtg 19183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 19271416 - 19271483
Alignment:
Q  238 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 305  Q
    |||||||| ||||||||| || |||||||||||||||| |  |||||||||  |||||||||| ||||    
T  19271416 tagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 16978988 - 16979030
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctg 202  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16978988 ttgagtagatagtcactttagtccttgactttgcaccttgctg 16979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  166 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaa 236  Q
    |||||||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 14891270 - 14891225
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 205  Q
    ||||| |||||||||||||||||| | ||| |||||||||||||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtca 14891225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 23772809 - 23772902
Alignment:
Q  163 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 256  Q
    ||||||| ||||||||| ||  ||||||||||||||||| ||||   |||||| ||| || ||| || |||||| |||| | ||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcaca 23772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 26327142 - 26327054
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 305  Q
    |||||||||| || || ||||||  ||||| |||||||| || || |||||||||||||||  |||||||||  | |||||||| ||||    
T  26327142 gactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgttaaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  220 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 305  Q
    ||||||| || ||||||||||||  ||||||||||| || ||||||| ||||||||||  ||||||| || |||||||||| ||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 11060910 - 11060796
Alignment:
Q  161 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 260  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||     ||||  ||||||  || || ||||||||||||| |||||| |||| |  |    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  261 ttatcagtttagtcc 275  Q
    |||||| ||||||||    
T  11060810 ttatcactttagtcc 11060796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 309
Target Start/End: Complemental strand, 7945681 - 7945532
Alignment:
Q  160 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 259  Q
    ||||| ||||| ||| |||||||| ||||| |||||||||||||||  |  || || |||||||||| || ||||||  ||||  ||| | ||||| ||     
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttcc 7945582  T
Q  260 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    ||||||| |||||||| |  |||||||||| |||| ||| | ||||||||    
T  7945581 gttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgtg 7945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 1001207 - 1001264
Alignment:
Q  217 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 274  Q
    ||||| |||| || |||||| |||||  ||||||||||| ||||||||||||||||||    
T  1001207 gactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 534569 - 534517
Alignment:
Q  257 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 309  Q
    |||||||||| |||||||| ||||||||||||| | |||||| | ||||||||    
T  534569 tctgttatcactttagtccctaccgttaaaaaaatctgttaagttatgatgtg 534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 12676595 - 12676483
Alignment:
Q  162 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 261  Q
    |||||||||||||||||| |   ||||| ||||||||| |||||   | ||| | | |||||||| || |||||| |||||  | ||||||||| | |||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  262 tatcagtttagtc 274  Q
    |||||||||||||    
T  12676495 tatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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