View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11560_low_7 (Length: 309)

Name: NF11560_low_7
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11560_low_7
NF11560_low_7
[»] chr1 (1 HSPs)
chr1 (11-295)||(28601889-28602185)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 28601889 - 28602185
Alignment:
Q  11 cacagagccacatcgtcaccgcaacattcacggtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcgaattaatca 110  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28601889 cacaaagccacatcgtcatcgcaacattcacagtagacaataaaataattatcaaagcccaagacataacacaactcttctgtcttattcgaattaatca 28601988  T
Q  111 cagtctcatacacgataata--acacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgacatttccaac 208  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28601989 cagtctcatacacgataataacacacacgattataattttgaacgatgtattttaaattttaaacttcactctaatcacccaagccccgacatttccaac 28602088  T
Q  209 aaatgatac----------taacagttatgttccattacatcattgacatgaaacaaaggattaaaatgcatgggaaagtcattttcagtatcttgt 295  Q
    |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602089 aaatgatactcatttatcttaacagttatgttccattacatcattgacatgaaacaaaggattaaaatgcatgggaaagtcattttcagtatcttgt 28602185  T

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