View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11560_low_9 (Length: 289)
Name: NF11560_low_9
Description: NF11560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11560_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 3021447 - 3021268
Alignment:
| Q |
95 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtca |
194 |
Q |
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| T |
3021447 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtca |
3021348 |
T |
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| Q |
195 |
ggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
274 |
Q |
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| T |
3021347 |
gcaaaattaagacaagctgattttcctttaagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
3021268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 3038316 - 3038137
Alignment:
| Q |
95 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtca |
194 |
Q |
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| T |
3038316 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtca |
3038217 |
T |
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| Q |
195 |
ggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
274 |
Q |
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| T |
3038216 |
gcaaaattaagacaagctgattttcctttaagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
3038137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 3030633 - 3030482
Alignment:
| Q |
123 |
gcctccatcgccgctctccttatctccaccgcatcattcgactccggcaacctcaaccgccatgcagagtcaggaaaattaagacaagctgattttccct |
222 |
Q |
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| T |
3030633 |
gcctccatcgcagctctccttatctccaccgcatcatttgactccggcaacgtcaaccgccatgcagagtcagcaaaattaagacaagctgattttcctt |
3030534 |
T |
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| Q |
223 |
taagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
274 |
Q |
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| T |
3030533 |
taagagtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
3030482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 42553687 - 42553784
Alignment:
| Q |
177 |
aaccgccatgcagagtcaggaaaattaagacaagctgattttcccttaagagcaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttgg |
274 |
Q |
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| T |
42553687 |
aaccgccacgcagagtcagcaaaattaagacaagctgatttaccgcgaagtgccagtgcggcaacgtcgtgtgcacgtgctgccatctcaggtgttgg |
42553784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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