View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_high_12 (Length: 313)
Name: NF11561_high_12
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1538323 - 1538604
Alignment:
| Q |
1 |
tgttggtggtgcttcttcatcagccatggaggattggatgattcaatgaaggaatgaagaagagaaaaatttgagaaaaacagagcacggcaatgaaaag |
100 |
Q |
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| T |
1538323 |
tgttggtggtgcttcttcatcagccatggaggattggatgattcaatgaaggaatgaagaagagaaaaatttgagaaaaacagagcacggcaatgaaaag |
1538422 |
T |
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| Q |
101 |
tttcgttgttatttaaagtggttgggaaaatgaaatgaaataaccctaagattaatctaaagggtgtaattgaaacaaagaaaatcttcaattttgtctc |
200 |
Q |
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| T |
1538423 |
tttcgttgttatttaaagtggttgggaaaatgaaatgaaataaccctaagattaatctaaagggtgtaattgaaacaaagaaaatcttcaattttgtctc |
1538522 |
T |
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| Q |
201 |
tatttggtcaattcaattgatgagaataatgatgaatttgtccnnnnnnnatctccatcccacctctccatttttacaggga |
282 |
Q |
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| T |
1538523 |
tatttggtcaattcaattgatgagaataatgatgaatttgtcctttttttatctccatcccacctctccatttttacaggga |
1538604 |
T |
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Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 10164281 - 10163982
Alignment:
| Q |
4 |
tggtggtgcttcttcatcagccatggaggattggatgattcaatgaaggaatgaagaagagaaaaat--ttgagaaaaa-----------cagagca--c |
88 |
Q |
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| T |
10164281 |
tggtggtgcttcttcatcatccatggaggattggatgattcaatgaaggaaggaagaagagaaaaatgtttgagaaaaatgtgagaaaagcagagcatac |
10164182 |
T |
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| Q |
89 |
ggcaatgaaaagtttcgttgttatttaaagtggttgggaaaatgaaatgaaat------aaccctaagattaatctaaagggtgtaattgaaacaaagaa |
182 |
Q |
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| T |
10164181 |
aacaatgaaacgttttgttgttatttaatgtgtttgggaaaatgaaatgaaatcaacccaaccctaagattaatctaaagggtgtaattgaaacaaagaa |
10164082 |
T |
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| Q |
183 |
aatcttcaattttgtctctatttggtcaattcaattgatgagaataatgatgaatttgtccnnnnnnnatctccatcccacctctccatttttacaggga |
282 |
Q |
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| T |
10164081 |
aatcttcaattttgtctctattcggtcaattcaattgatgagaataatgaagaattcgtccttttttaatatccatcccacctctccatttttacaggga |
10163982 |
T |
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