View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_high_18 (Length: 244)

Name: NF11561_high_18
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_high_18
NF11561_high_18
[»] chr2 (9 HSPs)
chr2 (3-238)||(15360898-15361133)
chr2 (88-219)||(2063137-2063269)
chr2 (67-180)||(15126130-15126244)
chr2 (91-219)||(40470651-40470780)
chr2 (126-219)||(25504579-25504670)
chr2 (90-122)||(13699066-13699098)
chr2 (90-122)||(25504689-25504721)
chr2 (90-125)||(7696248-7696283)
chr2 (90-125)||(24308513-24308548)
[»] chr5 (12 HSPs)
chr5 (66-218)||(27713311-27713462)
chr5 (69-188)||(22675034-22675154)
chr5 (104-205)||(4941346-4941446)
chr5 (90-223)||(24071948-24072080)
chr5 (126-219)||(8731237-8731328)
chr5 (164-242)||(5187278-5187355)
chr5 (90-122)||(8731186-8731218)
chr5 (180-239)||(25992352-25992411)
chr5 (164-239)||(33258560-33258634)
chr5 (90-124)||(7682840-7682874)
chr5 (90-126)||(14302202-14302238)
chr5 (90-126)||(30097619-30097655)
[»] chr4 (7 HSPs)
chr4 (88-231)||(28967134-28967277)
chr4 (87-153)||(12296442-12296508)
chr4 (77-153)||(46487528-46487604)
chr4 (158-217)||(38930118-38930177)
chr4 (89-153)||(27314451-27314515)
chr4 (90-125)||(43373866-43373901)
chr4 (193-239)||(22810844-22810889)
[»] chr6 (5 HSPs)
chr6 (66-173)||(13098299-13098406)
chr6 (67-141)||(16180659-16180732)
chr6 (126-231)||(16180535-16180642)
chr6 (90-125)||(32935102-32935137)
chr6 (91-125)||(17278261-17278295)
[»] scaffold0499 (1 HSPs)
scaffold0499 (66-173)||(6804-6911)
[»] chr7 (8 HSPs)
chr7 (85-188)||(25438412-25438517)
chr7 (66-173)||(48058394-48058503)
chr7 (90-153)||(9107413-9107475)
chr7 (90-125)||(28534288-28534323)
chr7 (90-125)||(23983491-23983526)
chr7 (145-219)||(25438673-25438748)
chr7 (176-239)||(48058343-48058406)
chr7 (66-104)||(47456819-47456857)
[»] chr1 (6 HSPs)
chr1 (66-209)||(19598882-19599031)
chr1 (90-153)||(16577546-16577608)
chr1 (90-125)||(37200388-37200423)
chr1 (167-218)||(50588964-50589015)
chr1 (177-223)||(17033942-17033988)
chr1 (90-123)||(38548838-38548871)
[»] chr8 (3 HSPs)
chr8 (164-217)||(8862314-8862367)
chr8 (91-125)||(25184919-25184953)
chr8 (90-125)||(30235891-30235926)
[»] chr3 (6 HSPs)
chr3 (104-219)||(47945974-47946090)
chr3 (90-125)||(1652650-1652685)
chr3 (90-121)||(12086528-12086559)
chr3 (66-125)||(25594308-25594366)
chr3 (90-125)||(27399231-27399266)
chr3 (89-137)||(40689505-40689552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (164-214)||(1347-1397)
[»] scaffold0063 (1 HSPs)
scaffold0063 (194-238)||(58493-58537)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 15360898 - 15361133
Alignment:
Q  3 aacataaatgatcacataatataatttgcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttggtgaaggggtatgtttttaggtggtga 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15360898 aacataaatgatcacatagtataatttgcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttcgtgaaggggtatgtttttaggtggtga 15360997  T
Q  103 tgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacgg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  15360998 tgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttattttttgggtgtttcgtctatatacgg 15361097  T
Q  203 cgcctttcgtttgtattatctatttcaccagtctct 238  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15361098 cgcctttcgtttgtattatctgtttcaccagtctct 15361133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 2063137 - 2063269
Alignment:
Q  88 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt---tgttatggtgtttatttttcggg 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| || |   | |||||||||||||||||||||    
T  2063137 gtttttaggtggtgatgtttattttggcgggtgttgtcaggtagggtttgactaggtg--ttgtgtgtagggatgtcttttatggtgtttatttttcggg 2063234  T
Q  185 tgtttcgtttatatacggcgcctttcgtttgtatt 219  Q
    |||||||  |||||||||| |||||||||||||||    
T  2063235 tgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 15126244 - 15126130
Alignment:
Q  67 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt-gtt 165  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  15126244 ggtggtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgtcaggtaggatttgactaggtgttttgtgtgtaagggttcttt 15126145  T
Q  166 atggtgtttattttt 180  Q
    |||| ||||||||||    
T  15126144 atggggtttattttt 15126130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 40470651 - 40470780
Alignment:
Q  91 tttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgttt 189  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||| |||||||||||| |||||||||| || ||||| | ||| |||||  ||||||     
T  40470651 tttaggtggtgatgtttattttggtgactgttgtcaggttggatttaactaggtgttttatgtgtaagggttttttatgttttttttttttaaggtgttc 40470750  T
Q  190 cgtttatatacggcgcctttcgtttgtatt 219  Q
    ||  ||||||| | | ||||||||||||||    
T  40470751 cgcatatatacagtgtctttcgtttgtatt 40470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 25504670 - 25504579
Alignment:
Q  126 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 219  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  25504670 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 13699098 - 13699066
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgtt 122  Q
    |||||||||||||||||||||||||||||||||    
T  13699098 ttttaggtggtgatgtttattttggtgggtgtt 13699066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 25504721 - 25504689
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgtt 122  Q
    |||||||||||||||||||||||||||||||||    
T  25504721 ttttaggtggtgatgtttattttggtgggtgtt 25504689  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 7696248 - 7696283
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||||||||||||||| |||||||||||||||||||    
T  7696248 ttttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 24308548 - 24308513
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24308548 ttttaggtgatgatgtttattttggtgggtgttgtc 24308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 27713311 - 27713462
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 165  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |  || ||    
T  27713311 tggtggtttcgtgaaggggtttgtttttaggcggtgatgtttattttggggggtgttgtcaggtagggtttgactaggtg-tttgtgtgtaggatttttt 27713409  T
Q  166 atggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 218  Q
    |||| |||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  27713410 atggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 22675154 - 22675034
Alignment:
Q  69 tggtttggtgaagggg-tatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgtta 166  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||| || |||    
T  22675154 tggttttgtgaagggggtctgtttttaggtggtgatgtttattttggtgggtg-tgtcaggtatggtttgactaggagttttgtgtgtaggggtttttta 22675056  T
Q  167 tggtgtttatttttcgggtgtt 188  Q
    ||||| |||||||| |||||||    
T  22675055 tggtgattattttttgggtgtt 22675034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 4941446 - 4941346
Alignment:
Q  104 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggc 203  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |  || |||||||||||||||||| |||||| ||| ||||||||||    
T  4941446 gtttattttggtgggtgt-gtcaggtagggtttgattaggtgttttgtgtgtaggattttttatggtgtttatttttcaggtgttccgtctatatacggc 4941348  T
Q  204 gc 205  Q
    ||    
T  4941347 gc 4941346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 24072080 - 24071948
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt-tgttatggtgtttatttttcgggtgtt 188  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||  | | || | ||||| |||||| ||||||||||||    
T  24072080 ttttatgtggtgatgtttattttggtgggtgttg-aaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgttta-ttttcgggtgtt 24071983  T
Q  189 tcgtttatatacggcgcctttcgtttgtattatct 223  Q
     ||  ||||||||||||| || |||||||||||||    
T  24071982 ccgcctatatacggcgcccttagtttgtattatct 24071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 8731237 - 8731328
Alignment:
Q  126 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 219  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  8731237 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 5187278 - 5187355
Alignment:
Q  164 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctgctc 242  Q
    |||||||||||| |||||||||| ||| | ||||| |||||||||| ||||||||| || ||||||||  |||||||||    
T  5187278 ttatggtgttta-ttttcgggtgcttcatctatatgcggcgccttttgtttgtattctcaatttcaccgatctctgctc 5187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 8731186 - 8731218
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgtt 122  Q
    |||||||||||||||||||||||||||||||||    
T  8731186 ttttaggtggtgatgtttattttggtgggtgtt 8731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 25992352 - 25992411
Alignment:
Q  180 tcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 239  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||  ||||||| |||||||    
T  25992352 tcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 33258634 - 33258560
Alignment:
Q  164 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 239  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||  ||||||||  | |||||||| |||||||    
T  33258634 ttatggtgtttatttt-cgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 7682840 - 7682874
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgt 124  Q
    |||||||||||||||| ||||||||||||||||||    
T  7682840 ttttaggtggtgatgtgtattttggtgggtgttgt 7682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 14302238 - 14302202
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtca 126  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14302238 ttttaggtggtgacgtgtattttggtgggtgttgtca 14302202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 30097619 - 30097655
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtca 126  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30097619 ttttaggtggtgacgtgtattttggtgggtgttgtca 30097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 28967134 - 28967277
Alignment:
Q  88 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtg 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  28967134 gtttttaggtggcgatgtttattttggtgggtgttgtcaggtagggtttgacttggtgttttgtgtgtaagggttttttagggtgttta-ttttcaggtg 28967232  T
Q  187 tttcgtttatatacggcgcctttcgtttgtattatctatttcacc 231  Q
    || ||  ||||||| |||||||||||||||||||||| |||||||    
T  28967233 ttccgcctatatacagcgcctttcgtttgtattatctgtttcacc 28967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 12296442 - 12296508
Alignment:
Q  87 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12296442 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttggctaggtgttgtgtgt 12296508  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 46487528 - 46487604
Alignment:
Q  77 tgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 153  Q
    |||||| || |||||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||    
T  46487528 tgaaggagtctgtttttaggaggtgatgtttattttggtgggtattgttaagtagggtttgtctaggtgttgtgtgt 46487604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 38930118 - 38930177
Alignment:
Q  158 gggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 217  Q
    ||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||    
T  38930118 gggtttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 27314515 - 27314451
Alignment:
Q  89 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 153  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||||||||| || |||| |||||    
T  27314515 tttttaggtactgatgtttattttagtaggtgttgtctggtagggtttgaccagatgttgtgtgt 27314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 43373901 - 43373866
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43373901 ttttagggggtgatgtttattttggtgggtgttgtc 43373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 22810889 - 22810844
Alignment:
Q  193 ttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 239  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  22810889 ttatatacggcgccttt-gtttgtattctcaatttcaccagtctctg 22810844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 13098406 - 13098299
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 165  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  13098406 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtatgagttttt 13098307  T
Q  166 atggtgtt 173  Q
    ||||||||    
T  13098306 atggtgtt 13098299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 16180732 - 16180659
Alignment:
Q  67 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgacta 141  Q
    ||||||||  ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16180732 ggtggtttcttgaaggggtctgtttt-aggtggtgatgtttattttggtggatgttgtcaggtagggtttgacta 16180659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 16180642 - 16180535
Alignment:
Q  126 aggtagggtttgactaggtgttttgtgtgtaagggttgtt-atggtgtttatttttcg-ggtgtttcgtttatatacggcgcctttcgtttgtattatct 223  Q
    ||||||||||||||||| ||||||||||| | | ||| || |||||||||||||||   |||||| || |||||||||| | ||||| ||||||||||||    
T  16180642 aggtagggtttgactagttgttttgtgtgaaggagttttttatggtgtttattttttttggtgttccgcttatatacggtgtctttcatttgtattatct 16180543  T
Q  224 atttcacc 231  Q
     |||||||    
T  16180542 gtttcacc 16180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 32935137 - 32935102
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  32935137 ttttaggtggtggtgtttattttggtgggtgttgtc 32935102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 17278295 - 17278261
Alignment:
Q  91 tttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||||||||| ||||||||||||||||||||||||    
T  17278295 tttaggtggtaatgtttattttggtgggtgttgtc 17278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 6804 - 6911
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 165  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |     
T  6804 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggttgggtttgactaggtgttttgtgtgtatggatttta 6903  T
Q  166 atggtgtt 173  Q
    ||||||||    
T  6904 atggtgtt 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 25438412 - 25438517
Alignment:
Q  85 tatgtttttaggtggtgatgtttattttggtggg-tgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcg 182  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||||||    
T  25438412 tatgtttttaggaggtgatgtttattttgggggggtgttgtcaggtagggtttgactaggtgttttgtgtgtaggggctttttatgatgtttacttttcg 25438511  T
Q  183 ggtgtt 188  Q
    ||||||    
T  25438512 ggtgtt 25438517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 48058503 - 48058394
Alignment:
Q  66 tggtggtttggtgaaggggtatgttttt--aggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttg 163  Q
    ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  | |||| |||||| | |||||| || ||     
T  48058503 tggtggtttcgagaaggggtctgtttttttaggtggtgatgtttattttggtgggtgttgtcaggtaggactcgactgggtgttctatgtgtagggtttt 48058404  T
Q  164 ttatggtgtt 173  Q
    ||| ||||||    
T  48058403 ttagggtgtt 48058394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 9107413 - 9107475
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 153  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||||| ||||||||| |||||    
T  9107413 ttttaggtggtgatgcttattttggtgggtgttg-aaggtagagtttggctaggtgttgtgtgt 9107475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 28534323 - 28534288
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  28534323 ttttaggtggtgatgtttattttggtgggtgttgtc 28534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 23983491 - 23983526
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||||||||||| |||||||||||||||||||||||    
T  23983491 ttttaggtggtggtgtttattttggtgggtgttgtc 23983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 25438673 - 25438748
Alignment:
Q  145 gttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 219  Q
    |||||||||||| ||| || |||||||||||| |||||||||||| ||  ||||||||| || | |||||||||||    
T  25438673 gttttgtgtgtaggggctttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 48058406 - 48058343
Alignment:
Q  176 tttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 239  Q
    ||||| ||||||| ||  |||||| | ||||||||||||||||| ||||||||||| |||||||    
T  48058406 tttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctg 48058343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 47456857 - 47456819
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatg 104  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  47456857 tggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 19598882 - 19599031
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac----taggtgttttgtgtg--taagg 159  Q
    ||||||||| |||||||  | | |||||||||||||||||| |||||| |||| ||||||||||||||||||||    |||||||||||||||  | |||    
T  19598882 tggtggtttcgtgaaggaatctatttttaggtggtgatgttcattttgatgggggttgtcaggtagggtttgaccatgtaggtgttttgtgtgcatgagg 19598981  T
Q  160 gttgttatggtgtttatttttcgggtgtttcgtttatatacggcgccttt 209  Q
     || | |||||||||| ||||| |||||| ||  ||||||||||||||||    
T  19598982 tttttcatggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 16577546 - 16577608
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 153  Q
    ||||||||| ||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||    
T  16577546 ttttaggtgatgatgtttattttggtgggtgttg-aaagtagggtatgactagatgttgtgtgt 16577608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 37200388 - 37200423
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37200388 ttttaggtggtgatgtttattttagtgggtgttgtc 37200423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 50589015 - 50588964
Alignment:
Q  167 tggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 218  Q
    ||||||||||| ||| |||||| ||  |||||||||||||||||||||||||    
T  50589015 tggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 17033942 - 17033988
Alignment:
Q  177 ttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatct 223  Q
    |||||||||||| || ||||||||| ||||||| |||||||||||||    
T  17033942 ttttcgggtgttccgcttatatacgacgccttttgtttgtattatct 17033988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 38548871 - 38548838
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttg 123  Q
    |||||||||||||||||||||||||||| |||||    
T  38548871 ttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 8862367 - 8862314
Alignment:
Q  164 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 217  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  8862367 ttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 25184953 - 25184919
Alignment:
Q  91 tttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||||||||||||||||||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtc 25184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 30235926 - 30235891
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30235926 ttttagggggtgatgtttattttggtgggtgttgtc 30235891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 47945974 - 47946090
Alignment:
Q  104 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt---gttatggtgtttatttttcgggtgtttcgtttatatac 200  Q
    ||||||||||||||||| |||||  || ||||||| ||||| ||||||||||| || ||    ||||||| |||||||||| |||||| ||  |||||||    
T  47945974 gtttattttggtgggtg-tgtcatataaggtttgattaggtattttgtgtgtagggtttttctttatggtatttatttttcaggtgttccgcctatatac 47946072  T
Q  201 ggcgcctttcgtttgtatt 219  Q
    | |||| ||||||||||||    
T  47946073 gacgcc-ttcgtttgtatt 47946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 1652685 - 1652650
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1652685 ttttagggggtgatgtttattttggtgggtgttgtc 1652650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 121
Target Start/End: Original strand, 12086528 - 12086559
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgt 121  Q
    ||||||||||||||||||||||||||||||||    
T  12086528 ttttaggtggtgatgtttattttggtgggtgt 12086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 25594366 - 25594308
Alignment:
Q  66 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| ||||||||||||||    
T  25594366 tggtcgttttgtgaaggagtatgtttt-aggtagtgatgtttattgtggtgggtgttgtc 25594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 27399231 - 27399266
Alignment:
Q  90 ttttaggtggtgatgtttattttggtgggtgttgtc 125  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27399231 ttttaggtgatgatgtttattttggtgggtgttgtc 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 40689552 - 40689505
Alignment:
Q  89 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttg 137  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  40689552 tttttaagtggtgatgtttatttttgtgggtgttg-aaggtagggtttg 40689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 1397 - 1347
Alignment:
Q  164 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgttt 214  Q
    |||||||||||||||||||||||||  |  |||||||||||||||| ||||    
T  1397 ttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 58493 - 58537
Alignment:
Q  194 tatatacggcgcctttcgtttgtattatctatttcaccagtctct 238  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||    
T  58493 tatatacggcgccttttgtttctattatctgtttcaccggtctct 58537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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