View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11561_high_21 (Length: 239)
Name: NF11561_high_21
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7921006 - 7921231
Alignment:
| Q |
1 |
ttttttccttttaagaagttgaattaacaccggagagaatcgaacttcaaaattcnnnnnnn-gcacactcttacatcccaaatcaataccaccaagcta |
99 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7921006 |
ttttttctttttaagaagttaaattaacaccggagagaatcgaacctcaaaatttaaggaagagcacactcttacatcccaaatcaataccaccaagcta |
7921105 |
T |
|
| Q |
100 |
acccaagtggtcgtccttcgtatatcctaacacagaaaaaacataacatttcaactcaacaccctataacatgatat-aatacaacaaatgaaatgaatt |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7921106 |
acccaagtggttgtccttcgtatatcctaacacacaaaaaacagaacatttcagctcaacaccctataacatgatataaatacaacaaatgaaatgaatt |
7921205 |
T |
|
| Q |
199 |
ggaagatgtgagatttgatgatttct |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7921206 |
ggaagatgtgagatttgatgatttct |
7921231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University