View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_high_5 (Length: 450)
Name: NF11561_high_5
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 23634038 - 23634463
Alignment:
| Q |
18 |
ttaaattctcattgaatgtttttaaaggtgagttgttatgtttgcatttatgcaagaatttctagtgagggagtgttagtagcattcctcatgttaacac |
117 |
Q |
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| T |
23634038 |
ttaaattctcattgaatgtttttaaaggtgagttgttatgttcgcatctatgcaagaatttctagtgagggagtgttagtagcattcctcatgttaacac |
23634137 |
T |
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| Q |
118 |
tc-gataacttatttatatatttatcgttaaagattctaacataacaaaattcacatatttgttaaaaacatatctctgtaaaataaattatttttatga |
216 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634138 |
tcagataacttatttatatatttattgttaaagattctaacataacaaaattcacatatttgttaaaaacatatctctgtaaaataaattatttttatga |
23634237 |
T |
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| Q |
217 |
gatgatactaaaatagcttgtctttttaaatatattttgaaattttatgataaaaaatcgtaacaaatggaataaatttgacctttataaaggacaagtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634238 |
gatgatactaaaatagcttgtctttttaaatata-tttgaaattttatgataaaaaatcgtaacaaatggaataaatttgacctttataaaggacaagtg |
23634336 |
T |
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| Q |
317 |
gccggaaatatcaaagaggtcagttgtccatgattaaac-aatcggcttggacgttgatatttaatgatgtgatgactatgagtataatcctaattccta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23634337 |
gccggaaatatcaaagaggtcagttgtccatgattaaacaaatcggcttggacgttgatatttaatgatgtgatgactatgagtataatcctaattccta |
23634436 |
T |
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| Q |
416 |
actactattcttagagtatcctatgct |
442 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23634437 |
actactattcttagagtatcctatgct |
23634463 |
T |
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