View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_high_7 (Length: 420)

Name: NF11561_high_7
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_high_7
NF11561_high_7
[»] chr5 (6 HSPs)
chr5 (14-286)||(37337323-37337594)
chr5 (14-287)||(11300583-11300835)
chr5 (314-400)||(29656902-29656988)
chr5 (216-289)||(26110685-26110758)
chr5 (213-286)||(23045484-23045557)
chr5 (324-400)||(10647715-10647792)
[»] chr6 (10 HSPs)
chr6 (14-284)||(15296147-15296416)
chr6 (307-400)||(29535838-29535931)
chr6 (214-287)||(31665627-31665700)
chr6 (333-400)||(29535398-29535465)
chr6 (333-400)||(29535628-29535695)
chr6 (216-287)||(31442516-31442586)
chr6 (216-286)||(826733-826802)
chr6 (216-286)||(20915998-20916067)
chr6 (326-401)||(8609464-8609540)
chr6 (326-400)||(907729-907803)
[»] chr4 (11 HSPs)
chr4 (285-402)||(16032574-16032691)
chr4 (314-400)||(56478897-56478983)
chr4 (314-400)||(6980524-6980610)
chr4 (216-286)||(12094856-12094925)
chr4 (216-287)||(6898753-6898823)
chr4 (324-400)||(37341992-37342068)
chr4 (216-283)||(9451245-9451311)
chr4 (216-286)||(24257703-24257772)
chr4 (221-286)||(9199512-9199576)
chr4 (253-286)||(27067874-27067907)
chr4 (324-380)||(34708226-34708282)
[»] chr7 (6 HSPs)
chr7 (306-400)||(39444989-39445083)
chr7 (306-402)||(40722600-40722696)
chr7 (306-400)||(85266-85360)
chr7 (306-379)||(48829730-48829803)
chr7 (216-286)||(20077343-20077412)
chr7 (218-286)||(39742297-39742364)
[»] chr3 (20 HSPs)
chr3 (308-400)||(14175690-14175782)
chr3 (308-400)||(54418911-54419003)
chr3 (306-400)||(41828191-41828285)
chr3 (307-400)||(953007-953100)
chr3 (306-400)||(41828014-41828109)
chr3 (216-286)||(1529165-1529235)
chr3 (216-288)||(39484809-39484881)
chr3 (216-263)||(37605421-37605468)
chr3 (216-287)||(52041385-52041455)
chr3 (253-287)||(15291460-15291494)
chr3 (344-400)||(50833764-50833821)
chr3 (344-400)||(50842032-50842089)
chr3 (256-287)||(1141743-1141774)
chr3 (216-286)||(22424371-22424440)
chr3 (324-400)||(9640250-9640327)
chr3 (253-286)||(49235514-49235547)
chr3 (344-400)||(50833829-50833886)
chr3 (344-400)||(50841967-50842024)
chr3 (219-287)||(42655772-42655839)
chr3 (324-376)||(48760785-48760837)
[»] chr1 (12 HSPs)
chr1 (306-400)||(42772462-42772556)
chr1 (314-400)||(23260957-23261043)
chr1 (306-400)||(47914580-47914674)
chr1 (307-391)||(51854491-51854575)
chr1 (306-389)||(28238169-28238252)
chr1 (216-287)||(46555501-46555572)
chr1 (216-286)||(15700721-15700790)
chr1 (42-131)||(44508763-44508852)
chr1 (216-286)||(22964007-22964076)
chr1 (236-286)||(24819183-24819233)
chr1 (192-233)||(44508642-44508683)
chr1 (363-402)||(50378364-50378404)
[»] chr2 (13 HSPs)
chr2 (314-402)||(12447158-12447246)
chr2 (307-400)||(43800395-43800488)
chr2 (314-400)||(9059860-9059946)
chr2 (216-288)||(28926073-28926144)
chr2 (216-287)||(32281485-32281555)
chr2 (216-286)||(38996521-38996590)
chr2 (324-400)||(25890462-25890538)
chr2 (253-288)||(6667461-6667496)
chr2 (216-287)||(22625388-22625458)
chr2 (217-283)||(21922337-21922402)
chr2 (253-286)||(28125536-28125569)
chr2 (324-373)||(41750618-41750667)
chr2 (324-400)||(4814607-4814683)
[»] chr8 (8 HSPs)
chr8 (158-286)||(23828343-23828471)
chr8 (214-287)||(42315341-42315414)
chr8 (214-288)||(45244283-45244357)
chr8 (306-368)||(9375442-9375504)
chr8 (216-286)||(26083903-26083972)
chr8 (252-288)||(7496756-7496792)
chr8 (216-287)||(26981034-26981104)
chr8 (216-286)||(3193175-3193244)
[»] scaffold0007 (1 HSPs)
scaffold0007 (306-392)||(252232-252318)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 37337594 - 37337323
Alignment:
Q  14 catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaa 113  Q
    |||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  37337594 catagggaactgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattgattattgaattgaa 37337496  T
Q  114 cgtaataaatgctaaagaaagaaaagtggatcgacagagttgatttttgaaggtgaaatgctaattaggaaaaacatcaaggagtaattaaggcataaac 213  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  37337495 cgtaataaatgctaaagaaagaaaagtggatcggcagagttgatttctcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaac 37337396  T
Q  214 attggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37337395 attggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 11300583 - 11300835
Alignment:
Q  14 catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaa 113  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||                 
T  11300583 catagggaaccgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattga------------- 11300668  T
Q  114 cgtaataaatgctaaagaaagaaaagtggatcgacagagttg--atttttgaaggtgaaatgctaattaggaaaaacatcaaggagtaattaaggcataa 211  Q
             ||| ||||||| |||||||||||| |||| |||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11300669 ---------tgccaaagaaaaaaaagtggatcggcagacttgtgatttttcaaggtgaaatgctgattaggaaaaacatcaaggagtaattaaggcataa 11300759  T
Q  212 acattggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||    
T  11300760 acattggagggaaaatattaggttaaaaattagggttacttatagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 29656902 - 29656988
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29656902 gttatctcacttagcatttaatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaagagtaag 29656988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 26110758 - 26110685
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagataag 289  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagataag 26110685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 23045557 - 23045484
Alignment:
Q  213 cattggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||||||||||||||| ||| | | | || |||||||||| || |||| |||||| |||||||||    
T  23045557 cattggagggaaaatattaggttaagaatcaggttaacatatagcttgatcagacaaactttagaaagaaagat 23045484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 10647715 - 10647792
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||| |||||||    
T  10647715 ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 10647792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 15296416 - 15296147
Alignment:
Q  14 catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaa 113  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  15296416 catagggaaccgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattgatgattgaattgaa 15296318  T
Q  114 cgtaataaatgctaaagaaagaaaagtggatcgacagagttgatttttgaaggtgaaatgctaattaggaaaaacatcaaggagtaattaaggcataaac 213  Q
    || |||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  15296317 cgcaataaatgctaaagaaagaaaagtggatcggcagacttgatttttcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaac 15296218  T
Q  214 attggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaag 284  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  15296217 attggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 29535838 - 29535931
Alignment:
Q  307 ttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  29535838 ttttagggttatcacatttagcattaaatgctacaattttggagccaaatttctagggttaaattgttgcaacctaataagattaaggagtaag 29535931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 31665627 - 31665700
Alignment:
Q  214 attggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31665627 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 29535398 - 29535465
Alignment:
Q  333 aatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29535398 aatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaag 29535465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 29535628 - 29535695
Alignment:
Q  333 aatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29535628 aatgctgcaattttgaagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaag 29535695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 31442586 - 31442516
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||| ||| |||   | || ||||||||||||||||||||||||||||||||    
T  31442586 tggagggaaaatattaggttaaaa-ttagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 826733 - 826802
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| ||| |   |||||||||||| ||||| |||||||||||||||    
T  826733 tggagggaaaatattaggttaaaa-ttaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 20915998 - 20916067
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||| ||||||| |||  | ||| |||||| || |||||||||||||||||||||    
T  20915998 tggagggaaaatattaggtt-aaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 8609464 - 8609540
Alignment:
Q  326 agcatttaatgctgcaattttggagccaaatttctagggttaagttgt-tgca-acctaataagattaaagagtaaga 401  Q
    |||| ||||||| |||  ||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  8609464 agcaattaatgcagcagatttggagccaaatttctagggttaa-ttgtatgcagacctaataagattaaggagtaaga 8609540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 907729 - 907803
Alignment:
Q  326 agcatttaatgctgcaattttggagccaaatttctagggttaagttgttgca-acctaataagattaaagagtaag 400  Q
    |||| ||||||| |||  ||||||||||||||||||||||||| ||||| || ||||||||| ||||| |||||||    
T  907729 agcaattaatgcagcagatttggagccaaatttctagggttaa-ttgttccagacctaataacattaaggagtaag 907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 16032574 - 16032691
Alignment:
Q  285 ataagtgaaggatgtgcttactttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaat 384  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16032574 ataagtgaaggatgtgtttactttttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaat 16032673  T
Q  385 aagattaaagagtaagag 402  Q
    |||||||| |||||||||    
T  16032674 aagattaaggagtaagag 16032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 56478897 - 56478983
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  56478897 gttatctcacttagcatttagtgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 56478983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 6980610 - 6980524
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||    
T  6980610 gttatctcatttaacatttaatgctgcaactttggagccaaatttttaaggttaaattgttgcaacctaataagattaaggagtaag 6980524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaa-ttagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 6898753 - 6898823
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||| ||||||||||||||||| | ||| ||||||  ||||||||| |||||||||||||||||||||||||    
T  6898753 tggacggaaaatattaggttaaga-ttagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 37341992 - 37342068
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||||| | |||||| | |||||  |||||| | |||||||||||| |||||||||||||||||||| |||||||    
T  37341992 ttagcattaattgctgctaatttggctccaaatctttagggttaagttattgcaacctaataagattaatgagtaag 37342068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 9451311 - 9451245
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaa 283  Q
    |||||||||||||||||||||||| ||| ||| |   |||||||||||| ||||||||||||||||||    
T  9451311 tggagggaaaatattaggttaaaa-ttagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 24257772 - 24257703
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||| ||||||||||||||||| ||| ||| |   || |||||||||||||||||||||||||||||||    
T  24257772 tggaggaaaaatattaggttaaaa-ttagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 9199576 - 9199512
Alignment:
Q  221 ggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||||||||| ||| |||    ||| ||||||||| |||||||||||||||||||||    
T  9199576 ggaaaatattaggttaaaa-ttagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 27067907 - 27067874
Alignment:
Q  253 atagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||| |||||||||||||||||||||||||||||    
T  27067907 atagtttgaccaaacaagctttagtaagaaagat 27067874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 34708282 - 34708226
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacc 380  Q
    |||||| |||||| |||| |||| |||| |||  |||||||||||||||||||||||    
T  34708282 ttagcaattaatgatgcatttttagagcaaaaaatctagggttaagttgttgcaacc 34708226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 39445083 - 39444989
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445083 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 39444989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 40722696 - 40722600
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaagag 402  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  40722696 tttttaggattatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataaaatttaggagtaagag 40722600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 85266 - 85360
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  85266 tttttagggttatctcacttagcatttaatattgcaattttggagccaaaattctagggttaagttgttgcaacctaataagattaaggagtaag 85360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 48829803 - 48829730
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaac 379  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48829803 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaac 48829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 20077343 - 20077412
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| |||    ||| |||||||||||||||||||||||||||||||    
T  20077343 tggagggaaaatattaggttaaaa-ttagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 39742297 - 39742364
Alignment:
Q  218 gagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||| | ||| |||||   ||||||||| ||||||||||||||||||||||||    
T  39742297 gagggaaaatattaggttaaga-ttagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 14175690 - 14175782
Alignment:
Q  308 tttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14175690 tttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 14175782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 54419003 - 54418911
Alignment:
Q  308 tttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54419003 tttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 54418911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 41828285 - 41828191
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41828285 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 41828191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 953007 - 953100
Alignment:
Q  307 ttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  953007 ttttagggttatctcatttagcatttaatgctgtaatttttgagctaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 953100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 41828109 - 41828014
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctaggg-ttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  41828109 tttttagggttatctcacttagcatttaatgttgtaattttggagccaaatttttagggtttaagttgttgcaacctaataagattaaggagtaag 41828014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 1529235 - 1529165
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  1529235 tggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 39484809 - 39484881
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggtta-cttatagcttgaccaaacaagctttagtaagaaagataa 288  Q
    |||||||||||||||||||||||| | | ||| | | |||||||||||||||||||||||||||||||||||||    
T  39484809 tggagggaaaatattaggttaaaact-agggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 37605421 - 37605468
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgacc 263  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttgacc 37605468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 52041385 - 52041455
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||| ||||||||||||||||||| ||| ||| |   |||||||||||| ||||||||||||||||||||||    
T  52041385 tggaaggaaaatattaggttaaaa-ttagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 15291494 - 15291460
Alignment:
Q  253 atagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||||||||||||||    
T  15291494 atagcttgaccaaacaagctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 50833821 - 50833764
Alignment:
Q  344 tttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    ||||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||    
T  50833821 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaaagagtaag 50833764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 50842032 - 50842089
Alignment:
Q  344 tttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    ||||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||    
T  50842032 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaaagagtaag 50842089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 287
Target Start/End: Complemental strand, 1141774 - 1141743
Alignment:
Q  256 gcttgaccaaacaagctttagtaagaaagata 287  Q
    ||||||||||||||||||||||||||||||||    
T  1141774 gcttgaccaaacaagctttagtaagaaagata 1141743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 22424371 - 22424440
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||| ||||||| ||| |   |||||||||||| | || ||||||||||||||||    
T  22424371 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 9640327 - 9640250
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    |||||||| ||||||||| |||| ||||||||  | ||||||||||||||||| ||||||| ||  |||| |||||||    
T  9640327 ttagcattaaatgctgcatttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaag 9640250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 49235514 - 49235547
Alignment:
Q  253 atagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||||||| ||||||||||||||||    
T  49235514 atagcttgaccaaacaaactttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 50833886 - 50833829
Alignment:
Q  344 tttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    ||||||||||||||| |||||||||||  |||| |||||||||| ||||| |||||||    
T  50833886 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaag 50833829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 50841967 - 50842024
Alignment:
Q  344 tttggagccaaatttctagggttaagttgttgc-aacctaataagattaaagagtaag 400  Q
    ||||||||||||||| |||||||||||  |||| |||||||||| ||||| |||||||    
T  50841967 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaag 50842024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 42655839 - 42655772
Alignment:
Q  219 agggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    ||||||||||||| ||||||| ||| ||| |   |||||||||||| ||||||||| ||||||||||||    
T  42655839 agggaaaatattatgttaaaa-ttagggtgaacaatagcttgaccagacaagctttggtaagaaagata 42655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 48760837 - 48760785
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgc 376  Q
    |||||||| |||| |||| |||| |||||||| || |||||||||||||||||    
T  48760837 ttagcattaaatgttgcagttttagagccaaaattttagggttaagttgttgc 48760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 42772556 - 42772462
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42772556 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 42772462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 23261043 - 23260957
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23261043 gttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 23260957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 47914580 - 47914674
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  47914580 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagattaaggagtaag 47914674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 51854491 - 51854575
Alignment:
Q  307 ttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagatta 391  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51854491 ttttagggttatctcatttagcatttaatgttgcaatcttggagccaaatttctagggttaagttgttgcaacctaataagatta 51854575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 28238169 - 28238252
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagat 389  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28238169 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagat 28238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 46555572 - 46555501
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||  |||||||||||||| |||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagata 46555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 15700790 - 15700721
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  15700790 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 44508852 - 44508763
Alignment:
Q  42 aaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaacgtaataaatgctaaaga 131  Q
    |||||||||| ||||||| ||||||| ||| || || ||||||||| |||||||||||||||||||| |||  ||||||||||| |||||    
T  44508852 aaaataaaactgcaaattaaatatgacactgaattgacatgttggaaaaacaaaattgatgattgaaatgattgtaataaatgccaaaga 44508763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 22964076 - 22964007
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||||||||||| || ||| ||||||  |||||||||||| ||||||||||||||| |||||    
T  22964076 tggagggaaaatattaggttagaa-ttagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 24819233 - 24819183
Alignment:
Q  236 aaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||| ||||| | |||||||||||||||||||||| ||||| |||||    
T  24819233 aaaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 44508683 - 44508642
Alignment:
Q  192 aaggagtaattaaggcataaacattggagggaaaatattagg 233  Q
    |||||| ||||||||| |||||||||||||||||| ||||||    
T  44508683 aaggagcaattaaggcttaaacattggagggaaaaaattagg 44508642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 50378404 - 50378364
Alignment:
Q  363 ggttaagttgttgcaa-cctaataagattaaagagtaagag 402  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  50378404 ggtttagttgttgcaaacctaataagattaaagagtaagag 50378364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 314 - 402
Target Start/End: Original strand, 12447158 - 12447246
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaagag 402  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12447158 gttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagag 12447246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 43800395 - 43800488
Alignment:
Q  307 ttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||| ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43800395 ttttagggttatctcatttaacatttaatactgcaatttcggagtcaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 43800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 9059860 - 9059946
Alignment:
Q  314 gttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  9059860 gttatctcacttagcatttaatgctgcaattttagagtcaaatttttagggttaagttgttgcaacctaataagattaaggagtaag 9059946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 28926144 - 28926073
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagataa 288  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagataa 28926073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 32281555 - 32281485
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    ||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  32281555 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 38996521 - 38996590
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| ||| || |||||||||| || |||||||||||||||||||||    
T  38996521 tggagggaaaatattaggttaaaa-ttagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 25890462 - 25890538
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||||| | |||||| | |||||  |||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  25890462 ttagcattaattgctgctaatttggctccaaatctttagggttaagttgttgcaacctaataagattaaggagtaag 25890538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 6667496 - 6667461
Alignment:
Q  253 atagcttgaccaaacaagctttagtaagaaagataa 288  Q
    |||||||||||||||||||||||| |||||||||||    
T  6667496 atagcttgaccaaacaagctttagaaagaaagataa 6667461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 22625388 - 22625458
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||| ||| |||  |  || ||||||||| ||||| ||||||||||||||||    
T  22625388 tggagggaaaatattaggttaaaa-ttagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 21922402 - 21922337
Alignment:
Q  217 ggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaa 283  Q
    ||||||||||||||||||||| | ||| ||| | ||||||||||| || ||||||||||| ||||||    
T  21922402 ggagggaaaatattaggttaaga-ttagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 28125569 - 28125536
Alignment:
Q  253 atagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||| |||||||||||||||||||||    
T  28125569 atagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 41750667 - 41750618
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgt 373  Q
    |||||||| |||||||||||||| ||||||||  | ||||||||||||||    
T  41750667 ttagcattaaatgctgcaattttagagccaaaaatttagggttaagttgt 41750618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 4814683 - 4814607
Alignment:
Q  324 ttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 400  Q
    |||||||| | |||||| | |||||  |||||| | |||||||||||  |||||||||||||| ||||| |||||||    
T  4814683 ttagcattaattgctgctaatttggctccaaatctttagggttaagtgtttgcaacctaataaaattaaggagtaag 4814607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 23828471 - 23828343
Alignment:
Q  158 ttttgaaggtgaaatgctaattaggaaaaacatcaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattacggttacttatagc 257  Q
    |||| ||||||  ||||| ||||||| |||||  ||||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||| |||||    
T  23828471 ttttcaaggtgccatgctgattaggataaacactaaggagtaattaaggctgaagcattggagggaaaatattaggttaaaaattagggttactaatagc 23828372  T
Q  258 ttgaccaaacaagctttagtaagaaagat 286  Q
    ||||||||||||||| |||||||||||||    
T  23828371 ttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 42315414 - 42315341
Alignment:
Q  214 attggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  42315414 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 45244283 - 45244357
Alignment:
Q  214 attggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagataa 288  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||| ||||||||||||||||||    
T  45244283 attggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagataa 45244357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 9375442 - 9375504
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaa 368  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||    
T  9375442 tttttagggttatctcacttagcatttaatgttgcagttttggagccaaatttctaggattaa 9375504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 26083972 - 26083903
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| |||    ||| ||||||||| |||||||||||||||||||||    
T  26083972 tggagggaaaatattaggttaaaa-ttagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 7496792 - 7496756
Alignment:
Q  252 tatagcttgaccaaacaagctttagtaagaaagataa 288  Q
    |||||||||| ||||||||||||||||||||||||||    
T  7496792 tatagcttgatcaaacaagctttagtaagaaagataa 7496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 26981104 - 26981034
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagata 287  Q
    |||||| ||||||||||||||||| ||| |||    ||| |||||| |||||||||||||||||||||||||    
T  26981104 tggaggaaaaatattaggttaaaa-ttagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 3193175 - 3193244
Alignment:
Q  216 tggagggaaaatattaggttaaaaattacggttacttatagcttgaccaaacaagctttagtaagaaagat 286  Q
    |||||||||||||||||||||||| ||| | | | | ||  |||||||| |||||||||||||||||||||    
T  3193175 tggagggaaaatattaggttaaaa-ttaagatgaataattacttgaccagacaagctttagtaagaaagat 3193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 252318 - 252232
Alignment:
Q  306 tttttagagttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaa 392  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||||| ||||    
T  252318 tttttagggttatatcacttagcatttaatgctgcaattttgaaaccaaatttctatgattaagttgttgcaacctaataagtttaa 252232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University