View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_high_8 (Length: 365)
Name: NF11561_high_8
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 27697953 - 27698282
Alignment:
| Q |
19 |
aattcttgtaccctatggcgaacaatggaaaaagatgaagaaagttcttgttaaagatttgttctcttcacgaaggcatcaatggcttcaagataaaagg |
118 |
Q |
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| T |
27697953 |
aattcttgtaccctatggcgaacaatggaaaaagatgaagaaagttcttgttaaagatttgttctcttcacgaaggcatcaatggcttcaagataaaagg |
27698052 |
T |
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| Q |
119 |
aacgaagaagccgacaatcttatgttttacgtgtacaacaaatgcaacaatggtggcctggtgaatgtaaggattgctactcaacattattgtggtaatg |
218 |
Q |
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| T |
27698053 |
aacgaagaagccgacaatcttatgttttacgtgtacaacaaatgcaacaatggtggcctggtgaatgtaaggattgctactcaacattattgtggtaatg |
27698152 |
T |
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| Q |
219 |
tgtataggaaattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggtcttgaggaagttgaacatgttgatgctgctttcgt |
318 |
Q |
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| T |
27698153 |
tgtataggaaattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggtcttgaggaagttgaacatgttgatgctgctttcgt |
27698252 |
T |
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| Q |
319 |
attacttaactgtgtttttgctttctctgc |
348 |
Q |
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| T |
27698253 |
aatgcttaactgtgtttttgctttctctgc |
27698282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 348
Target Start/End: Complemental strand, 27714155 - 27713831
Alignment:
| Q |
24 |
ttgtaccctatggcgaacaatggaaaaagatgaagaaagttcttgttaaagatttgttctcttcacgaaggcatcaatggcttcaagataaaaggaacga |
123 |
Q |
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| T |
27714155 |
ttgtaccctttggcgaacagtggaaaaagatgaagaacgtcgttgctaacaatttgctctctccacgcaggcatcaatggcttcaacacaaaaggaacga |
27714056 |
T |
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| Q |
124 |
agaagccgacaatcttatgttttacgtgtacaacaaatgcaacaatggtggcctggtgaatgtaaggattgctactcaacattattgtggtaatgtgtat |
223 |
Q |
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| T |
27714055 |
agaagccgataatcttatattttatgtgtataacaaatgcaacaatggtggccttgtgaatgttaggattgcaacacaacatttttgtggtaatgtgttt |
27713956 |
T |
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| Q |
224 |
aggaaattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggtcttgaggaagttgaacatgttgatgctgctttcgtattac |
323 |
Q |
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| T |
27713955 |
aggaaactgttttttaatacaaggtactttggaaaaggtatggaggatggagggccaggtcttgaggaaattgaacatgttgatgctgttttcacattgc |
27713856 |
T |
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| Q |
324 |
ttaactgtgtttttgctttctctgc |
348 |
Q |
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| T |
27713855 |
ttaaccatgtttatgctttctctgc |
27713831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 26408951 - 26409238
Alignment:
| Q |
28 |
accctatggcgaacaatggaaaaagatgaagaaagttcttgttaaagatttgttctcttcacgaaggcatcaatggcttcaagataaaaggaacgaagaa |
127 |
Q |
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| T |
26408951 |
accctttggcgaacaatggaaaaagatgaagaaaatcattgttaacgatttgttgtctccacaaagatatcgatggcttcaagacaaaaggaacgaagaa |
26409050 |
T |
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| Q |
128 |
gccgacaatcttatgttttacgtgtacaacaaatgcaacaatggtggcctggtgaatgtaaggattgctactcaacattattgtggtaatgtgtatagga |
227 |
Q |
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| T |
26409051 |
gccgataatcttatcttttatgtatacaacaaatgcaacaatggtgatcttgtgagtgttagacttgcttcacaacattattgcggtaatgtgtatagga |
26409150 |
T |
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| Q |
228 |
aattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggtcttgaggaagttgaacatgttgatgctgcttt |
315 |
Q |
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| T |
26409151 |
aaatgtattttaatacaaggtactttggaaagggtatgaaggatggagggcctggtcttgaggaaattgagcatgttgatgctgcttt |
26409238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 310
Target Start/End: Complemental strand, 27746804 - 27746697
Alignment:
| Q |
203 |
cattattgtggtaatgtgtataggaaattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggtcttgaggaagttgaacatg |
302 |
Q |
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||||||||| ||||| || ||||||||| ||||||| ||||||||||||||| |||| | || |||||||| |||||| | |||||||||||||||| |
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| T |
27746804 |
cattattgttgtaatttgatgaggaaattggtttttaatacaaggtactttggagaaggaagtaatgatggaggtcctggtttggaggaagttgaacatg |
27746705 |
T |
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| Q |
303 |
ttgatgct |
310 |
Q |
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| T |
27746704 |
tagatgct |
27746697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 27727190 - 27727133
Alignment:
| Q |
226 |
gaaattgttttttaacacaaggtactttggaaaaggtatgaaggatggagggcctggt |
283 |
Q |
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||||||| ||||||| ||||||||||||||| |||| | ||| |||||||| |||||| |
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| T |
27727190 |
gaaattgatttttaatacaaggtactttggagaaggaaggaatgatggaggccctggt |
27727133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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