View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_low_1 (Length: 720)
Name: NF11561_low_1
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 698; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Original strand, 36892683 - 36893400
Alignment:
| Q |
1 |
aaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36892683 |
aaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagtaccaagtgccattcataacactacctca |
36892782 |
T |
|
| Q |
101 |
agaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaactttggaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892783 |
agaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaactttggaata |
36892882 |
T |
|
| Q |
201 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892883 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagccgaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
36892982 |
T |
|
| Q |
301 |
gcaaatgatgtgggatataaaatggtttcaggtacataaaat-gtataatctttatctcttccaagtgaaaatgtttgtacaagttgatccatgtgatta |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892983 |
gcaaatgatgtgggatataaaatggtttcaggtacataaaattgtataatctttatctcttccaagtgaaaatgtttgtacaagttgatccatgtgatta |
36893082 |
T |
|
| Q |
400 |
ttttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36893083 |
ttttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattt |
36893182 |
T |
|
| Q |
500 |
tcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttc |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36893183 |
tcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttc |
36893282 |
T |
|
| Q |
600 |
ctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcactt |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893283 |
ctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcactt |
36893382 |
T |
|
| Q |
700 |
attggtctctgcttctcc |
717 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
36893383 |
atcggtctctgcttctcc |
36893400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 36881599 - 36881936
Alignment:
| Q |
7 |
gacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaa |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| | |||||| ||| |
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|
| T |
36881599 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
36881698 |
T |
|
| Q |
107 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgag------aatgattaagcattcaaaaccagaactttggaata |
200 |
Q |
| |
|
||||||||||||| ||||||||| || | || ||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
36881699 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaagcactcaaaaccagaactttggaata |
36881798 |
T |
|
| Q |
201 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
300 |
Q |
| |
|
| || ||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||| |
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|
| T |
36881799 |
acttaattcttgcaatggataaggaggagaatacaatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgcctt |
36881898 |
T |
|
| Q |
301 |
gcaaatgatgtgggatataaaatggtttcaggtacata |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36881899 |
acaaatgatgtgggatataaaatggtttcaggtacata |
36881936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 418 - 716
Target Start/End: Original strand, 36883098 - 36883396
Alignment:
| Q |
418 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
517 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
36883098 |
ttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaa |
36883197 |
T |
|
| Q |
518 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgc |
617 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
36883198 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagcca |
36883297 |
T |
|
| Q |
618 |
tgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgcttctc |
716 |
Q |
| |
|
||||||||||||||||| ||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||||||| |
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|
| T |
36883298 |
agtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgcttctc |
36883396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 420 - 683
Target Start/End: Original strand, 36902908 - 36903168
Alignment:
| Q |
420 |
ggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggt |
519 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||| | || ||||| || ||||||||| | | | || |||||| || |||| ||||| |
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|
| T |
36902908 |
ggagcagtatatcaaaagccttgtgccagaacacttacatttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggt |
36903007 |
T |
|
| Q |
520 |
cttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctg |
619 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| || | |
|
|
| T |
36903008 |
cttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcag |
36903107 |
T |
|
| Q |
620 |
tacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
683 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
36903108 |
tacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 36901989 - 36902141
Alignment:
| Q |
189 |
aactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcag---at |
285 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||| | |||||||| ||||||||||||||||||||||| || || |||||||||| | ||| || |
|
|
| T |
36901989 |
aactttggaatagcttggttcttgcaaaggatgataagcagaatacaatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatat |
36902088 |
T |
|
| Q |
286 |
tgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacata |
338 |
Q |
| |
|
|||| | ||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36902089 |
tgctaggtctgcattacaaatgatgtgggatatgaaatggtttcaggtacata |
36902141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 36901716 - 36901846
Alignment:
| Q |
9 |
caccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaaga |
108 |
Q |
| |
|
||||| ||||||||||||| | |||||| ||| ||||||||| || ||||||||||| || ||||| |||| | | || |||| |||||| ||| | |
|
|
| T |
36901716 |
caccaattttggttgcagctagaaatggcatatatgaaatggtgaaagaaattctaatcgaagcaccaactgccctccgtagtactaactcaagcaaaca |
36901815 |
T |
|
| Q |
109 |
aaatgtattgcttgttgcagtcaaatacagg |
139 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
36901816 |
aaatgtattgcttgttgcagtagaatacagg |
36901846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
288 |
ctggttctgccttgcaaatgatgtgggatataaaatggtttcaggta |
334 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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