View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_low_10 (Length: 418)
Name: NF11561_low_10
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 4751608 - 4751215
Alignment:
| Q |
16 |
atcaaatgcggtgctttgtggtacttggaaatgataaaaatttaagacattatgttagaacaaaccacagtgatacttatttctttctggatccatttga |
115 |
Q |
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| T |
4751608 |
atcaaatgcggtgctttgtggtacttggaaatgataaaaatttaagacattacgttagaacaaaccacggtgatacttatttctttctggatccatttga |
4751509 |
T |
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| Q |
116 |
tgcttagtgctgcctagaatccatagcacaattaagacttgcatgtttattttattcactaacacattgtttgatacaagagaaactgggaggaaattga |
215 |
Q |
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| T |
4751508 |
tgcttagtgctgcctagaatccatagcacaattaagacttgcatgtttattttattcactaacacattgtttgatacaagagaaactgggaggaaattga |
4751409 |
T |
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| Q |
216 |
agttttctcctgtttgcttcaagagagaaaatggagatatagaaaacttagcagtggaagtcctcactcgccagtgaaagaattcttcactaaagaaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751408 |
agttttctcctgtttgcttcaagagagaaaatggagatatagaaaacttagcagtggaagtcctcactcgccagtgaaagaattcttcactaaagaaaac |
4751309 |
T |
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| Q |
316 |
ttggctaagatagcatacaaactatgttttcaaataatggtgttcaattttgtgttctagaattgtgtgacgcctaaaccaatttgtgtctgtg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751308 |
ttggctaagatagcatacaaactatgttttcaaataatggtgttcaattttgtgttctagaattgtgtgacgcctaaaccaatttgtgtctgtg |
4751215 |
T |
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