View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_low_13 (Length: 358)

Name: NF11561_low_13
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_low_13
NF11561_low_13
[»] chr3 (3 HSPs)
chr3 (7-358)||(7623833-7624184)
chr3 (7-358)||(7659501-7659852)
chr3 (25-358)||(7675128-7675461)
[»] chr4 (1 HSPs)
chr4 (65-204)||(45477623-45477762)


Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 7623833 - 7624184
Alignment:
Q  7 gaattcttccatgactttgttggagaagagatgaactgaggagatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatag 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  7623833 gaattcttccatgactttgttggagaagagatgaacggaggagatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatag 7623932  T
Q  107 ttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgcca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7623933 ttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgcca 7624032  T
Q  207 cgataacgtccacaaaacctaatttgaggtgcatcaaagggccatggatttttgccaaggctgcaatagactggcgtggggcaggacccaagtgtggcat 306  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7624033 cgataacgtccacaaaacctaatttgaggtgcattaaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcat 7624132  T
Q  307 gttacctattataggccatggttttggtccaggtggaagtggtagtgatgaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7624133 gttacctattataggccatggttttggtccaggtggaagtggtagtgatgaa 7624184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 7659852 - 7659501
Alignment:
Q  7 gaattcttccatgactttgttggagaagagatgaactgaggagatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatag 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  7659852 gaattcttccatgactttgtttgagaagagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatag 7659753  T
Q  107 ttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgcca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7659752 ttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgcca 7659653  T
Q  207 cgataacgtccacaaaacctaatttgaggtgcatcaaagggccatggatttttgccaaggctgcaatagactggcgtggggcaggacccaagtgtggcat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7659652 cgataacgtccacaaaacctaatttgaggtgcatcaaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcat 7659553  T
Q  307 gttacctattataggccatggttttggtccaggtggaagtggtagtgatgaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7659552 gttacctattataggccatggttttggtccaggtggaagtggtagtgatgaa 7659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 25 - 358
Target Start/End: Complemental strand, 7675461 - 7675128
Alignment:
Q  25 gttggagaagagatgaactgaggagatttttcggagcattcgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatattta 124  Q
    |||||||||||| ||||| |  | |||||||| ||| | |||||||| ||||||||||||  |||||||||| |||||||| |||||| |||| || |||    
T  7675461 gttggagaagaggtgaacagtagtgatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtactta 7675362  T
Q  125 gctccggtgttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaac 224  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||| || |||||  | |    
T  7675361 gctccggcattgggtggccggctactaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagc 7675262  T
Q  225 ctaatttgaggtgcatcaaagggccatggatttttgccaaggctgcaatagactggcgtggggcaggacccaagtgtggcatgttacctattataggcca 324  Q
    ||||||||||||||||||||||||||| | |||  ||||||| ||||| ||| ||| |||| ||||| || | |||||| | |||||||||||| |||||    
T  7675261 ctaatttgaggtgcatcaaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggcca 7675162  T
Q  325 tggttttggtccaggtggaagtggtagtgatgaa 358  Q
    |||||||||||||||||| |||||||||||||||    
T  7675161 tggttttggtccaggtgggagtggtagtgatgaa 7675128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
Q  65 cgccaccgtggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat 164  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||  ||||| || |||| ||| | ||||||||||  ||| || | |||||    
T  45477762 cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat 45477663  T
Q  165 gaacctttaagaattgttcggcaacggagcctgaagccgc 204  Q
    |||| |||||||||||||| || || ||| | ||||||||    
T  45477662 gaacttttaagaattgttcagcgaccgaggcggaagccgc 45477623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University