View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_low_14 (Length: 327)
Name: NF11561_low_14
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 15360671 - 15360350
Alignment:
| Q |
10 |
agaataataaatcataggtgcaatcttggttcatgatgaataaccaattttctaattctttttctcggtttttaggtatattcatcaaacataaaaattg |
109 |
Q |
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| T |
15360671 |
agaagaataaatcataggtgcaatcttggttcatgatgaataaccaattttctaattctttttctcggtttttaggtatattcatcaaacttaaaaattg |
15360572 |
T |
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| Q |
110 |
aaagccaaaactcattatatctcttaggttgtag-----------------catgcacaaaccaaaatcaaga-ccaaaaataaagatgcaagaaccaaa |
191 |
Q |
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| T |
15360571 |
aaagccaaaactcattttatctcttaggttgtagtttcttgaatcaataagcatgcacaaaccaaaatcaagaaccaaaaataaagatgcaagaaccaaa |
15360472 |
T |
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| Q |
192 |
cttcatttcatctttt--aggtttgtggttgtagttgcatgaaacaataataagaatcaatagagatgcaagaatgattaaaaatctactttgattatca |
289 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15360471 |
cttcatttcatcttttttaggtt-gtggttgtagttgcatgaaacaataataagaatcaatagagatgcaagaatgattaaaaatctactttgattatca |
15360373 |
T |
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| Q |
290 |
gctggaaaataaatcgttgagtt |
312 |
Q |
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| T |
15360372 |
gctggaaaataaatcgttgagtt |
15360350 |
T |
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