View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_low_29 (Length: 206)

Name: NF11561_low_29
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_low_29
NF11561_low_29
[»] scaffold1339 (1 HSPs)
scaffold1339 (1-48)||(1918-1965)
[»] chr3 (17 HSPs)
chr3 (1-51)||(46888475-46888525)
chr3 (1-48)||(16302635-16302682)
chr3 (1-48)||(37987178-37987225)
chr3 (1-48)||(46914973-46915020)
chr3 (1-48)||(46915732-46915779)
chr3 (1-46)||(46889272-46889317)
chr3 (1-48)||(16854649-16854696)
chr3 (1-48)||(37986416-37986463)
chr3 (1-48)||(50802595-50802642)
chr3 (1-48)||(50873235-50873282)
chr3 (1-47)||(13644127-13644173)
chr3 (1-46)||(16303395-16303440)
chr3 (104-171)||(27545344-27545411)
chr3 (5-48)||(50801835-50801878)
chr3 (5-48)||(50874002-50874045)
chr3 (1-48)||(53948662-53948709)
chr3 (1-47)||(43400775-43400821)
[»] scaffold0093 (2 HSPs)
scaffold0093 (1-50)||(22774-22823)
scaffold0093 (1-48)||(21957-22004)
[»] chr4 (20 HSPs)
chr4 (146-190)||(56341033-56341077)
chr4 (1-48)||(6784843-6784890)
chr4 (1-48)||(19550232-19550279)
chr4 (1-48)||(36855672-36855719)
chr4 (1-48)||(42418987-42419034)
chr4 (1-48)||(42419716-42419763)
chr4 (1-46)||(12835182-12835227)
chr4 (1-46)||(19549466-19549511)
chr4 (1-46)||(25478080-25478125)
chr4 (1-46)||(50696932-50696977)
chr4 (1-48)||(12834421-12834468)
chr4 (1-47)||(36854912-36854958)
chr4 (1-46)||(18032761-18032806)
chr4 (1-48)||(50696186-50696233)
chr4 (1-46)||(25236392-25236437)
chr4 (1-48)||(21825154-21825201)
chr4 (2-48)||(13767729-13767775)
chr4 (2-43)||(13767497-13767538)
chr4 (1-46)||(25478804-25478849)
chr4 (9-50)||(29004353-29004394)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-48)||(8413-8460)
[»] chr8 (14 HSPs)
chr8 (1-48)||(3583648-3583695)
chr8 (1-48)||(16846815-16846862)
chr8 (1-48)||(16847679-16847726)
chr8 (1-48)||(29267946-29267993)
chr8 (3-48)||(20054271-20054316)
chr8 (1-48)||(3583297-3583344)
chr8 (1-48)||(34654204-34654251)
chr8 (1-46)||(24023028-24023073)
chr8 (1-48)||(3582434-3582481)
chr8 (7-46)||(41273797-41273836)
chr8 (1-51)||(29268821-29268871)
chr8 (1-46)||(41272969-41273014)
chr8 (11-48)||(20054999-20055036)
chr8 (1-48)||(14754176-14754221)
[»] chr7 (18 HSPs)
chr7 (1-48)||(24306351-24306398)
chr7 (1-48)||(30471012-30471059)
chr7 (1-48)||(32021224-32021271)
chr7 (1-48)||(42489978-42490025)
chr7 (1-46)||(30468697-30468742)
chr7 (1-48)||(30001805-30001852)
chr7 (1-48)||(30469444-30469491)
chr7 (1-48)||(32022668-32022715)
chr7 (1-48)||(36784520-36784567)
chr7 (1-48)||(42489216-42489263)
chr7 (1-46)||(30002564-30002609)
chr7 (1-46)||(36783763-36783808)
chr7 (1-46)||(37706328-37706373)
chr7 (1-48)||(24307113-24307160)
chr7 (1-34)||(30470129-30470162)
chr7 (1-48)||(3163504-3163551)
chr7 (1-48)||(30659857-30659904)
chr7 (1-48)||(46428125-46428172)
[»] chr6 (9 HSPs)
chr6 (1-48)||(1370161-1370208)
chr6 (1-48)||(1371059-1371106)
chr6 (1-48)||(18969113-18969160)
chr6 (1-46)||(24063784-24063829)
chr6 (1-48)||(18969856-18969903)
chr6 (1-40)||(5114213-5114252)
chr6 (1-48)||(32907429-32907476)
chr6 (1-42)||(34713364-34713405)
chr6 (1-48)||(18649905-18649952)
[»] chr5 (22 HSPs)
chr5 (1-48)||(492142-492189)
chr5 (1-48)||(3259074-3259121)
chr5 (1-48)||(9917731-9917778)
chr5 (1-48)||(14481466-14481513)
chr5 (1-48)||(15915821-15915868)
chr5 (1-46)||(3259814-3259859)
chr5 (1-46)||(36038591-36038636)
chr5 (1-48)||(10394870-10394917)
chr5 (1-48)||(14480751-14480798)
chr5 (4-46)||(9918492-9918534)
chr5 (1-43)||(12281114-12281156)
chr5 (1-43)||(25835861-25835903)
chr5 (1-46)||(4737809-4737854)
chr5 (1-46)||(25836616-25836661)
chr5 (1-48)||(10394107-10394154)
chr5 (1-46)||(15883170-15883215)
chr5 (1-46)||(15915088-15915133)
chr5 (1-48)||(4737047-4737094)
chr5 (1-32)||(12281869-12281900)
chr5 (1-48)||(42520438-42520485)
chr5 (1-48)||(490915-490964)
chr5 (1-50)||(21148104-21148153)
[»] chr2 (22 HSPs)
chr2 (1-48)||(863208-863255)
chr2 (1-48)||(863968-864015)
chr2 (1-48)||(8043806-8043853)
chr2 (1-48)||(34453012-34453059)
chr2 (1-51)||(36151103-36151153)
chr2 (1-46)||(34452254-34452299)
chr2 (1-46)||(36150340-36150385)
chr2 (1-46)||(37876155-37876200)
chr2 (1-48)||(2054357-2054404)
chr2 (1-48)||(2055087-2055134)
chr2 (1-48)||(24429620-24429667)
chr2 (1-48)||(24433374-24433421)
chr2 (1-48)||(27059178-27059225)
chr2 (1-48)||(38985992-38986039)
chr2 (6-48)||(2868667-2868709)
chr2 (5-46)||(19911137-19911178)
chr2 (1-46)||(37875395-37875440)
chr2 (1-48)||(27060019-27060066)
chr2 (1-48)||(8911843-8911890)
chr2 (1-50)||(8911166-8911215)
chr2 (1-42)||(38986857-38986898)
chr2 (1-48)||(20203306-20203354)
[»] chr1 (19 HSPs)
chr1 (1-48)||(4594708-4594755)
chr1 (1-48)||(4595582-4595629)
chr1 (1-48)||(40959778-40959825)
chr1 (1-48)||(48577562-48577609)
chr1 (1-46)||(23174046-23174091)
chr1 (1-46)||(23601740-23601785)
chr1 (1-46)||(48644837-48644882)
chr1 (1-46)||(51661363-51661408)
chr1 (1-48)||(24081456-24081503)
chr1 (1-48)||(31150680-31150727)
chr1 (1-48)||(31151440-31151487)
chr1 (1-48)||(40958889-40958936)
chr1 (1-46)||(39870067-39870112)
chr1 (1-50)||(39870817-39870866)
chr1 (1-48)||(24082203-24082250)
chr1 (1-47)||(23173287-23173333)
chr1 (1-48)||(51660605-51660653)
chr1 (1-48)||(14886836-14886883)
chr1 (1-48)||(21791488-21791535)


Alignment Details
Target: scaffold1339 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1965 - 1918
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 1918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46888525 - 46888475
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctct 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46888525 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatctct 46888475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16302682 - 16302635
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16302682 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 16302635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37987178 - 37987225
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37987178 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 37987225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46915020 - 46914973
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  46915020 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 46914973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46915732 - 46915779
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  46915732 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 46915779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46889272 - 46889317
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  46889272 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 46889317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16854649 - 16854696
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16854649 atttggtgtcaaactaattttgacaccatgatgtcatttgatcctatc 16854696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37986463 - 37986416
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  37986463 atttggtgtcaaactaattttgacaccatggtgtcatttgatcttatc 37986416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50802595 - 50802642
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  50802595 atttggtgtcaaactaattttgacaccatggtgtcaattgatcctatc 50802642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50873282 - 50873235
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  50873282 atttggtgtcaaactaattttgacaccatggtgtcaattgatcctatc 50873235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13644127 - 13644173
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctat 47  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  13644127 atttggtgtcaaactaattttgacaccatggtatcatttgatcctat 13644173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16303395 - 16303440
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  16303395 atttggtgtcaaactaattttgacaccatgatgtcatttgatccta 16303440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 27545411 - 27545344
Alignment:
Q  104 cacacatattcaaatgagcttatgcataccgttcgagaaatatacatatacaaggctggatatcttaa 171  Q
    |||| |||||||||| | ||||||||||| ||| |||||||||||||| ||| ||||||||| |||||    
T  27545411 cacatatattcaaataatcttatgcatacagtttgagaaatatacatagacacggctggataccttaa 27545344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 50801878 - 50801835
Alignment:
Q  5 ggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  50801878 ggtgtcaaactaattttgacaccatggtgtcatttgatcatatc 50801835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 50874002 - 50874045
Alignment:
Q  5 ggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  50874002 ggtgtcaaactaattttgacaccatggtgtcatttgatcatatc 50874045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 53948709 - 53948662
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  53948709 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 53948662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43400775 - 43400821
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctat 47  Q
    ||||||||||||| | | |||||||||||||||| ||||||||||||    
T  43400775 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctat 43400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22774 - 22823
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctc 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22774 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatctc 22823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22004 - 21957
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||    
T  22004 atttggtgtcaaactaattttgacaccatggtatcatttgatcctatc 21957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 56341033 - 56341077
Alignment:
Q  146 tacatatacaaggctggatatcttaacagtggtgacgcaacaaca 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  56341033 tacatatacaaggctggatatcttaacagtggtgacgcaacaaca 56341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6784890 - 6784843
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  6784890 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 6784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19550232 - 19550279
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  19550232 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 19550279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36855672 - 36855719
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  36855672 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 36855719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42419034 - 42418987
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  42419034 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 42418987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42419716 - 42419763
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  42419716 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 42419763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12835182 - 12835227
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  12835182 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 12835227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19549511 - 19549466
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  19549511 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 19549466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25478125 - 25478080
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  25478125 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 25478080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50696932 - 50696977
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  50696932 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 50696977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12834468 - 12834421
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  12834468 atttggtgtcaaactaattttgacaccatagtgtcatttgatcctatc 12834421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36854958 - 36854912
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctat 47  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  36854958 atttgatgtcaaactaattttgacaccatggtgtcatttgatcctat 36854912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18032806 - 18032761
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  18032806 atttcgtgtcaaactaattttgacaccatggtgtcatttgatccta 18032761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50696233 - 50696186
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  50696233 atttagtgtcaaactaattttgacaccaaggtgtcatttgatcctatc 50696186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25236437 - 25236392
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||    
T  25236437 atttagtgtcaaactaattttgacaccatgatgtcatttgatccta 25236392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21825154 - 21825201
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  21825154 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 21825201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 13767729 - 13767775
Alignment:
Q  2 tttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  13767729 tttggtgtcaaactaattttgacactatattgtcatttgatcctatc 13767775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 13767538 - 13767497
Alignment:
Q  2 tttggtgtcaaactaattttgacaccatggtgttatttgatc 43  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  13767538 tttggtgtcaaattaattttgacaccatggtgtcttttgatc 13767497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25478804 - 25478849
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||||||||||||||| |||| | | |||||||||||    
T  25478804 atttggtgtcaaactaattttgacaacatgatatcatttgatccta 25478849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 29004353 - 29004394
Alignment:
Q  9 tcaaactaattttgacaccatggtgttatttgatcctatctc 50  Q
    ||||||||||||||||| |||||||| ||||||| |||||||    
T  29004353 tcaaactaattttgacatcatggtgtcatttgattctatctc 29004394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8460 - 8413
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8460 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 8413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3583648 - 3583695
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  3583648 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 3583695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16846862 - 16846815
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16846862 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 16846815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16847679 - 16847726
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16847679 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 16847726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29267993 - 29267946
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  29267993 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 29267946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 20054316 - 20054271
Alignment:
Q  3 ttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  20054316 ttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 20054271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3583297 - 3583344
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  3583297 atttggtgtcaaattaattttgacaccatggtgtcatttgatcctatc 3583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34654251 - 34654204
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  34654251 atttgctgtcaaactaattttgacaccatggtgtcatttgatcctatc 34654204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24023028 - 24023073
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  24023028 atttgttgtcaaactaattttgacaccatggtgtcatttgatccta 24023073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3582481 - 3582434
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  3582481 atttggtgtcaaactaattttgacaccatgatgtcatttgatcatatc 3582434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 41273797 - 41273836
Alignment:
Q  7 tgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  41273797 tgtcaaactaattttgacaccatggtgtcatttgatccta 41273836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29268821 - 29268871
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctct 51  Q
    ||||| ||||||| |||||||||||||||||||| |||||||| |||||||    
T  29268821 atttgatgtcaaattaattttgacaccatggtgtcatttgatcatatctct 29268871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41273014 - 41272969
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||    
T  41273014 atttgatgtcaaactaattttaacaccatggtgtcatttgatccta 41272969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 20054999 - 20055036
Alignment:
Q  11 aaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  20054999 aaactaattttgacaccatggtgtcatttgatcatatc 20055036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14754221 - 14754176
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||  |||| |||||||| ||||    
T  14754221 atttggtgtcaaactaattttgacacca--gtgtcatttgatcatatc 14754176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24306398 - 24306351
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24306398 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 24306351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30471012 - 30471059
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  30471012 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 30471059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32021271 - 32021224
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32021271 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 32021224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42489978 - 42490025
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  42489978 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 42490025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30468742 - 30468697
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  30468742 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 30468697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30001852 - 30001805
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  30001852 atttggtgtcaaactaattttgacaccatagtgtcatttgatcctatc 30001805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30469444 - 30469491
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  30469444 atttgatgtcaaactaattttgacaccatggtgtcatttgatcctatc 30469491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32022668 - 32022715
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  32022668 atttggtgtcaaactaattttgacaccatggtgtcatttgatcatatc 32022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36784520 - 36784567
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||    
T  36784520 atttggtgtcaaactaattttgacaccatggtatcatttgatcctatc 36784567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42489263 - 42489216
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  42489263 atttggtgtcaaactaattttgacaccatggtgtcatttgattctatc 42489216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30002564 - 30002609
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  30002564 atttgatgtcaaactaattttgacaccatggtgtcatttgatccta 30002609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36783808 - 36783763
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  36783808 atttggtgtcaaactaattttgacaccatggtatcatttgatccta 36783763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37706328 - 37706373
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||    
T  37706328 atttggtgtcaaactaattttgacaccatagtgtcatttgatccta 37706373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24307113 - 24307160
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  24307113 atttgatgtcaaactaattttgacatcatggtgtcatttgatcctatc 24307160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30470162 - 30470129
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30470162 atttggtgtcaaactaattttgacaccatggtgt 30470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3163504 - 3163551
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  3163504 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 3163551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30659904 - 30659857
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  30659904 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 30659857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46428125 - 46428172
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  46428125 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 46428172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1370208 - 1370161
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1370208 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 1370161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1371059 - 1371106
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1371059 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 1371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18969160 - 18969113
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  18969160 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 18969113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24063784 - 24063829
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  24063784 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 24063829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18969856 - 18969903
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  18969856 atttagtgtcaaactaattttgacaccatggtgtcatttgatcctatc 18969903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5114252 - 5114213
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttg 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5114252 atttggtgtcaaactaattttgacaccatggtgtcatttg 5114213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32907476 - 32907429
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  32907476 atttggtgtcaaattaaatttgacaccatggtgtcatttgatcctatc 32907429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34713364 - 34713405
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgat 42  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  34713364 atttgatgtcaaactaattttgacaccatggtgtcatttgat 34713405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18649905 - 18649952
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  18649905 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 18649952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 492142 - 492189
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  492142 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 492189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3259121 - 3259074
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  3259121 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 3259074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9917778 - 9917731
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9917778 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 9917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14481466 - 14481513
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  14481466 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 14481513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15915821 - 15915868
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  15915821 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 15915868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3259814 - 3259859
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  3259814 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 3259859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36038591 - 36038636
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  36038591 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 36038636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10394870 - 10394917
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10394870 atttggtgtcaaactaattttgacaccatggtgtcattttatcctatc 10394917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14480798 - 14480751
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  14480798 atttggtgtcaaactaattttgacaccatggtgtcatttgatcatatc 14480751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 9918492 - 9918534
Alignment:
Q  4 tggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  9918492 tggtgtcaaactaattttgacaccatggtgtcatttgatccta 9918534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12281156 - 12281114
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatc 43  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  12281156 atttggtgtcaaactaattttgacaccatggtgtcatttgatc 12281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25835903 - 25835861
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatc 43  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25835903 atttggtgtcaaactaattttgacaccatggtgtcatttgatc 25835861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4737809 - 4737854
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||    
T  4737809 atttggtgtcaaactaattttgacatcatggtgtcatttgatccta 4737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25836616 - 25836661
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  25836616 atttggtgtcaaaataattttgacaccatggtgtcatttgatccta 25836661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10394154 - 10394107
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  10394154 atttggtgtcaaattaattttgacaccatggtgtcatttgatcttatc 10394107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15883215 - 15883170
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||    
T  15883215 atttgatgtcaaactaattttgacaccatgatgtcatttgatccta 15883170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15915133 - 15915088
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||    
T  15915133 atttggtgtcaaattaattttgacaccatgatgtcatttgatccta 15915088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4737094 - 4737047
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||| ||||||||| |||||||||||||||||| |||||||| ||||    
T  4737094 atttgatgtcaaacttattttgacaccatggtgtcatttgatcttatc 4737047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12281869 - 12281900
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggt 32  Q
    ||||||||||||||||||||||||||||||||    
T  12281869 atttggtgtcaaactaattttgacaccatggt 12281900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42520438 - 42520485
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | ||||||||| ||||||||||||||||||||    
T  42520438 atttggtgtcaaatttaatttgacaccttggtgttatttgatcctatc 42520485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 490964 - 490915
Alignment:
Q  1 atttggtgtcaaactaattttg--acaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||  |||||||||||| |||||||| ||||    
T  490964 atttggtgtcaaactaattttgacacaccatggtgtcatttgatcatatc 490915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21148104 - 21148153
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctc 50  Q
    ||||||||||||| | | ||||||||| |||||| |||||||||||||||    
T  21148104 atttggtgtcaaatttaatttgacaccttggtgtcatttgatcctatctc 21148153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 863255 - 863208
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  863255 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 863208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 863968 - 864015
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  863968 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 864015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8043806 - 8043853
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8043806 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 8043853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34453012 - 34453059
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  34453012 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 34453059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36151103 - 36151153
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctct 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  36151103 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctaactct 36151153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34452299 - 34452254
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  34452299 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 34452254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36150385 - 36150340
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  36150385 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 36150340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37876155 - 37876200
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  37876155 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 37876200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2054404 - 2054357
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2054404 atttagtgtcaaactaattttgacaccatggtgtcatttgatcctatc 2054357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2055087 - 2055134
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2055087 attttgtgtcaaactaattttgacaccatggtgtcatttgatcctatc 2055134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24429667 - 24429620
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  24429667 atttggtgtcaaactaattttgacacgatggtgtcatttgatcctatc 24429620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24433374 - 24433421
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  24433374 atttggtgtcaaactaattttgacatcatggtgtcatttgatcctatc 24433421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27059225 - 27059178
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  27059225 atttggtgtgaaactaattttgacaccatggtgtcatttgatcctatc 27059178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38986039 - 38985992
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38986039 atttggtgtcaaactaattttgacaccatagtgtcatttgatcctatc 38985992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 2868667 - 2868709
Alignment:
Q  6 gtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  2868667 gtgtcaaactaattttgacaccatggtgtcatttgatcctatc 2868709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 19911137 - 19911178
Alignment:
Q  5 ggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  19911137 ggtgtcaaactaattttgacaccatggtgtcatttgatccta 19911178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37875440 - 37875395
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  37875440 atttcgtgtcaaactaattttgacaccatggtgtcatttgatccta 37875395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27060019 - 27060066
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  27060019 atttggtgtcaaactaattttgacactatggtatcatttgatcctatc 27060066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8911843 - 8911890
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  8911843 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 8911890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8911215 - 8911166
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctc 50  Q
    |||||||||||||   | |||||||||||||||| |||||||||||||||    
T  8911215 atttggtgtcaaatataatttgacaccatggtgtcatttgatcctatctc 8911166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38986857 - 38986898
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgat 42  Q
    ||||||||||||||||||||||| |||||| ||| |||||||    
T  38986857 atttggtgtcaaactaattttgataccatgatgtcatttgat 38986898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20203306 - 20203354
Alignment:
Q  1 atttggtgtcaaact-aattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | || |||||||||||||||| |||||||||||||    
T  20203306 atttggtgtcaaatttaaatttgacaccatggtgtcatttgatcctatc 20203354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4594755 - 4594708
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  4594755 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 4594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4595582 - 4595629
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  4595582 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 4595629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40959778 - 40959825
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  40959778 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 40959825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48577562 - 48577609
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  48577562 atttggtgtcaaactaattttgacaccatggtgtcatttgatcctatc 48577609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23174046 - 23174091
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  23174046 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 23174091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23601785 - 23601740
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  23601785 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 23601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48644837 - 48644882
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  48644837 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 48644882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 51661363 - 51661408
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  51661363 atttggtgtcaaactaattttgacaccatggtgtcatttgatccta 51661408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24081503 - 24081456
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24081503 atttggtgtcaaattaattttgacaccatggtgtcatttgatcctatc 24081456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31150727 - 31150680
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31150727 atttggtgtcaaactaattttgacaccattgtgtcatttgatcctatc 31150680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31151440 - 31151487
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  31151440 atttggtgtcaaactaattttgataccatggtgtcatttgatcctatc 31151487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40958936 - 40958889
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||    
T  40958936 atttggtgtcaaactaattttgacaccatggtatcatttgatcctatc 40958889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39870112 - 39870067
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatccta 46  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  39870112 atttggtgtcaaactaattttgacaccatggcgtcatttgatccta 39870067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39870817 - 39870866
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatctc 50  Q
    ||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  39870817 atttggtgtcaaactaaatttgacaccatggtgtcatttgatcatatctc 39870866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24082203 - 24082250
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  24082203 atttggtgtcaaactaattttgataccatgatgtcatttgatcctatc 24082250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23173333 - 23173287
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctat 47  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  23173333 atttagtgtcaaactaattttgacaccatgatgtcatttgatcctat 23173287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 51660653 - 51660605
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatg-gtgttatttgatcctatc 48  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  51660653 atttggtgacaaactaattttgacaccatgtgtgtcatttgatcctatc 51660605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14886836 - 14886883
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  14886836 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 14886883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21791488 - 21791535
Alignment:
Q  1 atttggtgtcaaactaattttgacaccatggtgttatttgatcctatc 48  Q
    ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  21791488 atttggtgtcaaatttaatttgacaccatggtgtcatttgatcctatc 21791535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University