View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_low_3 (Length: 516)

Name: NF11561_low_3
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_low_3
NF11561_low_3
[»] chr3 (9 HSPs)
chr3 (19-279)||(32059793-32060053)
chr3 (31-279)||(13076712-13076957)
chr3 (48-279)||(51423135-51423363)
chr3 (34-279)||(11684806-11685048)
chr3 (346-450)||(32059611-32059715)
chr3 (346-454)||(51422962-51423070)
chr3 (347-427)||(11684656-11684736)
chr3 (448-506)||(32060106-32060164)
chr3 (451-506)||(51423482-51423537)
[»] scaffold0167 (4 HSPs)
scaffold0167 (31-277)||(16162-16408)
scaffold0167 (19-147)||(20520-20648)
scaffold0167 (347-445)||(16476-16575)
scaffold0167 (451-506)||(20412-20467)
[»] chr4 (15 HSPs)
chr4 (31-279)||(19848424-19848672)
chr4 (21-279)||(19847884-19848144)
chr4 (31-279)||(19847038-19847286)
chr4 (19-279)||(14463771-14464025)
chr4 (346-506)||(19847351-19847511)
chr4 (347-506)||(19848199-19848358)
chr4 (150-279)||(19847577-19847706)
chr4 (347-452)||(19847706-19847811)
chr4 (346-429)||(19846889-19846972)
chr4 (19-92)||(7055946-7056019)
chr4 (390-453)||(7056020-7056084)
chr4 (440-506)||(19848737-19848803)
chr4 (448-503)||(7055835-7055890)
chr4 (450-503)||(14463658-14463711)
chr4 (402-453)||(581435-581484)
[»] scaffold0442 (3 HSPs)
scaffold0442 (19-279)||(13734-13990)
scaffold0442 (348-450)||(14056-14158)
scaffold0442 (448-506)||(13624-13682)
[»] chr8 (5 HSPs)
chr8 (31-279)||(8210741-8210989)
chr8 (31-279)||(9288957-9289202)
chr8 (346-453)||(9288782-9288889)
chr8 (346-445)||(8210581-8210680)
chr8 (452-506)||(9289267-9289321)
[»] chr2 (5 HSPs)
chr2 (19-140)||(38979066-38979182)
chr2 (346-455)||(38974514-38974623)
chr2 (192-279)||(38974657-38974744)
chr2 (448-503)||(38979238-38979293)
chr2 (375-420)||(44484767-44484812)
[»] chr5 (4 HSPs)
chr5 (395-458)||(23196117-23196180)
chr5 (402-453)||(41612838-41612887)
chr5 (407-454)||(19832213-19832258)
chr5 (406-454)||(21116945-21116992)
[»] chr7 (3 HSPs)
chr7 (357-444)||(18564779-18564864)
chr7 (391-453)||(39443894-39443955)
chr7 (402-453)||(45623321-45623370)
[»] scaffold0214 (2 HSPs)
scaffold0214 (393-454)||(11564-11623)
scaffold0214 (393-454)||(25864-25923)
[»] chr6 (4 HSPs)
chr6 (402-455)||(23158115-23158166)
chr6 (402-450)||(20014729-20014775)
chr6 (402-454)||(31575113-31575163)
chr6 (402-453)||(21686110-21686159)
[»] scaffold0537 (1 HSPs)
scaffold0537 (392-457)||(11311-11375)
[»] scaffold0039 (1 HSPs)
scaffold0039 (406-459)||(79965-80017)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 32060053 - 32059793
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagat 118  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32060053 tgatttcccttaaaacaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagat 32059954  T
Q  119 agaaacaatatttagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaat 218  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059953 ataaacaatatttagtacactttcttgtatcacccgcaagtttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaat 32059854  T
Q  219 aaaaatctgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059853 aaaaatttgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 32059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 31 - 279
Target Start/End: Original strand, 13076712 - 13076957
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13076712 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagatagaaacaatatt 13076811  T
Q  131 tagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 230  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  13076812 tagtacactttcttgtaccacccgcaagtttgggatagtaaattgccatgaatcc---tagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 13076908  T
Q  231 taagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13076909 taagagggaattttttggaagttgatatgaatgtgctctctttgattca 13076957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 51423363 - 51423135
Alignment:
Q  48 ttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatttagtacactttcttgta 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  51423363 ttcaccaatttaattttaaagtgatgtgaataggaaataatgtttctgagtagataatgggaggaaaagatagaaacagtatttagtaccctttcttgta 51423264  T
Q  148 tcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgttaagaggggattttttg 247  Q
     ||||| ||| ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51423263 ccacccccaagtttgggatagtaaattgccatgaatcc---tagtggtttgatgaaaagttaaagttgaataaaaatctgtgttaagaggggattttttg 51423167  T
Q  248 gaagttgatatgaatgtgctctctttgattca 279  Q
    ||||||||||||||||||||||||||||||||    
T  51423166 gaagttgatatgaatgtgctctctttgattca 51423135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 11685048 - 11684806
Alignment:
Q  34 caatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatttag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  11685048 caatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgagaggaaaagatagaaacaatatttag 11684949  T
Q  134 tacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgttaa 233  Q
    |||||||||||||| ||||||||| |||||||||||| |||| ||||||||   | | ||||||||||||||||||||||||||||||| ||||||||||    
T  11684948 tacactttcttgtaccacccgcaagtttgggatagtatattgccatgaatc---tcattggtttgatgaaaagttaaagttgaataaaagtctgtgttaa 11684852  T
Q  234 gaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
      ||||||||||||||||||||| |||||| |||||||||||||||    
T  11684851 atggggattttttggaagttgatgtgaatgagctctctttgattca 11684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 32059715 - 32059611
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  32059715 ctgttaaaattaaaagttacataataagtggaagttagaggataaaattgaaatgtaaaataggctacaccaaatcaaaaagaattgcctttattaatag 32059616  T
Q  446 gtata 450  Q
    |||||    
T  32059615 gtata 32059611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 454
Target Start/End: Complemental strand, 51423070 - 51422962
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||    
T  51423070 ctgttaaaattgaaaattacataataagtggaagttagaggataaaattggaatgcaaaataggctacaccaaacccaaaagtattgcctttattaatag 51422971  T
Q  446 gtatagata 454  Q
    |||||||||    
T  51422970 gtatagata 51422962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 427
Target Start/End: Complemental strand, 11684736 - 11684656
Alignment:
Q  347 tgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaag 427  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||| |||||    
T  11684736 tgttaaatttagaagttacataataaatggaagttagaggataaaattagaatgtaaaatagacaacaccaaaccgaaaag 11684656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 32060164 - 32060106
Alignment:
Q  448 atagataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||    
T  32060164 atagataatgatccaatcaaataatgatctcatgtatgatataaatttagatacttttg 32060106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 51423537 - 51423482
Alignment:
Q  451 gataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    |||||| ||||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  51423537 gataatgatctaatcaaataatgatctcctctatgatataaatttagatacctttg 51423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 31 - 277
Target Start/End: Original strand, 16162 - 16408
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16162 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagatagaaacaatatt 16261  T
Q  131 tagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 230  Q
    |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  16262 tagtacactttcttgtatcacctgcaactttgggatagtaaattgccatgaatccttttagtggtttgatgaaaagttaaagttgaacaaaaatatgtgt 16361  T
Q  231 taagaggggattttttggaagttgatatgaatgtgctctctttgatt 277  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  16362 taagaggagattttttggaagttgatatgaatgtgctctctttgatt 16408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 20520 - 20648
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagat 118  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20520 tgatttcccttgaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagat 20619  T
Q  119 agaaacaatatttagtacactttcttgta 147  Q
    |||||||||||||||||||||||||||||    
T  20620 agaaacaatatttagtacactttcttgta 20648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 347 - 445
Target Start/End: Original strand, 16476 - 16575
Alignment:
Q  347 tgttaaaattggaagttacataataagtggaagttagaggataaaattggaatg--taaaataggctacaccaaaccaaaaagaattgcctttgttaata 444  Q
    |||| |||||||||||||||||||||||||||||||||| |||| | |||||||  |||||||||||||||||||||||||| |||||||||| ||||||    
T  16476 tgttgaaattggaagttacataataagtggaagttagagaataatactggaatgtataaaataggctacaccaaaccaaaaa-aattgcctttattaata 16574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 20412 - 20467
Alignment:
Q  451 gataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  20412 gataatgatctaatcaaataatgatctcatgtatgatataaatttagatacctttg 20467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 19848672 - 19848424
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  19848672 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgttattgagtagataatgggaggaaaagatagaaacaatatt 19848573  T
Q  131 tagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  19848572 tagtacactttcttgtatcacccgcaagtttgggatagtaaattgccatgaatccttttagtggtttgataaaaagttaaagttgaataaaaatttgtgt 19848473  T
Q  231 taagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  19848472 taagaagggaatttttggaagttgatatgaatgtgctctctttgattca 19848424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 19848144 - 19847884
Alignment:
Q  21 atttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatag 120  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19848144 atttcccttgaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagacaa 19848045  T
Q  121 aaacaatatttagtacactttcttgtatcacccgcaa--atttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaat 218  Q
    ||| |||||||||||||||||||||||||||| ||||   |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19848044 aaataatatttagtacactttcttgtatcacctgcaagtttttaagatagtaaattgtcatgaatccttttagtggtttgatgaaaaattaaagttgaat 19847945  T
Q  219 aaaaatctgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19847944 aaaaatttgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 19847884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 19847286 - 19847038
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  19847286 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagacaaaaataatatt 19847187  T
Q  131 tagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 230  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19847186 tagtacactttcttgtatcacccgcaagtttgagatggtaaattgccatgaatccttttagtggtttgatgaaaagataaagttgaataaaaatttgtgt 19847087  T
Q  231 taagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||||||    
T  19847086 taagaggggattttttggaagatggtattaatgtgctatctttgattca 19847038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 14463771 - 14464025
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagat 118  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14463771 tgatttcccttaaagcgatctcttttcatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagat 14463870  T
Q  119 agaaacaatatttagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaat 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  14463871 agaaacaatatttagtacactttcttgtaccacccgcaagtttgggatagtaaattgccatgaatccttttagtggtttgatgaaaaattaaagttgaat 14463970  T
Q  219 aaaaatctgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    ||||||||       |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  14463971 aaaaatct------cgaggagattttttagaagttgttatgaatgtgctctctttgattca 14464025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 346 - 506
Target Start/End: Complemental strand, 19847511 - 19847351
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  19847511 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcttttattaatag 19847412  T
Q  446 gtatagataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19847411 gtatagataatgatctaatcaaataatgatctcatgtatgatataaatttcgatacctttg 19847351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 347 - 506
Target Start/End: Complemental strand, 19848358 - 19848199
Alignment:
Q  347 tgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatagg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19848358 tgttaaaattggaagttacataataagtggaagttagaggataaacttggaatgtaaaataggctacaccaaaccaaaaagaattgcctttcttaatagg 19848259  T
Q  447 tatagataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  19848258 tatagataatgatctaatcagataataatctcatgtatgatataaatttcgatacctttg 19848199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 19847706 - 19847577
Alignment:
Q  150 acccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgttaagaggggattttttgga 249  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19847706 acccgcaagtttgggatagtaaattgccatgaatccttttaatggtttgataaaaagttaaagttgaataaaaatctgtattaagaggggattttttgga 19847607  T
Q  250 agttgatatgaatgtgctctctttgattca 279  Q
    |||||||||||||| |||||||||||||||    
T  19847606 agttgatatgaatgcgctctctttgattca 19847577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 347 - 452
Target Start/End: Complemental strand, 19847811 - 19847706
Alignment:
Q  347 tgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatagg 446  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  19847811 tgttaaaattggaagttacataataagtgaaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctctattaatagg 19847712  T
Q  447 tataga 452  Q
    ||||||    
T  19847711 tataga 19847706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 19846972 - 19846889
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaa 429  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19846972 ctgttaaaattgaaagttacataataagtggaagttagaggataaaattgaaatgtaaaataggctacaccaaaccaaaaagaa 19846889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 7055946 - 7056019
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgttt 92  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7055946 tgatttcccttgaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgttt 7056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 7056020 - 7056084
Alignment:
Q  390 aaattggaatgtaaaataggctacaccaaacc-aaaaagaattgcctttgttaataggtatagat 453  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  7056020 aaattggaatgtaaaataggctacaccaaaccaaaaaagaattgcctttattaataggtatagat 7056084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 19848803 - 19848737
Alignment:
Q  440 taataggtatagataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    |||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  19848803 taataggtattgataatgatctaattaaataataatctcatgtatgatataaatttcgatacatttg 19848737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 448 - 503
Target Start/End: Original strand, 7055835 - 7055890
Alignment:
Q  448 atagataattatctaatcaaataattatctcatgtatgatataaatttcgatacct 503  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  7055835 atagataatgatctaatcaaataatgatctcatgtatgatataaatttagatacct 7055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 503
Target Start/End: Original strand, 14463658 - 14463711
Alignment:
Q  450 agataattatctaatcaaataattatctcatgtatgatataaatttcgatacct 503  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||    
T  14463658 agataatgatctaatcaaataatgatctcatggatgatataaatttagatacct 14463711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 581484 - 581435
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagat 453  Q
    ||||||||||||||||||| |||  | ||||||||| |||||||||||||||    
T  581484 aaaataggctacaccaaactaaa--gtattgcctttattaataggtatagat 581435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 13734 - 13990
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagat 118  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13734 tgatttcccttgaagcaatctctttccatttcaccaatttaatttttaagtgatgtgaatagaaaataatgtttttgagtagataatgggaggaaaagat 13833  T
Q  119 agaaacaatatttagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaat 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||    
T  13834 agaaacaatatttagtacactttcttgtaccacccgcaagtttgggatagtaaattgccatgaatcc---tagtggtttgatgaaaagttaaagttgaat 13930  T
Q  219 aaaaatctgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13931 aaaaatatgtgttaagaaggga-tttttggaagttgatatgaatgtgctctctttgattca 13990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 348 - 450
Target Start/End: Original strand, 14056 - 14158
Alignment:
Q  348 gttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggt 447  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||    
T  14056 gttaaaattggaagttacataataagtggaagttataggataaaattggaatgtaaaataggctacaccaaactaaaaagtaatgcctttattaataggt 14155  T
Q  448 ata 450  Q
    |||    
T  14156 ata 14158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 13624 - 13682
Alignment:
Q  448 atagataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  13624 atagataatgatctaatcaaataatgatctcatgtatgatataaatttagatacatttg 13682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 8210989 - 8210741
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8210989 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagatagaaacaatatt 8210890  T
Q  131 tagtacactttcttgtatcacccgcaaa--tttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgt 228  Q
    | ||||||||||||||| ||||||||||  ||||||||||||||||| |||||||||   ||||||||||||||||| |||||||||||||||||| |||    
T  8210889 ttgtacactttcttgtaccacccgcaaaagtttgggatagtaaattgccatgaatcc---tagtggtttgatgaaaatttaaagttgaataaaaatttgt 8210793  T
Q  229 gttaagagggga-ttttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8210792 gttaagaggggatttttttggaagttgatatgaatgtgctctctttgattca 8210741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 9289202 - 9288957
Alignment:
Q  31 aagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagatagaaacaatatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  9289202 aagcaatctctttccatttcaccaatttaattttgaagtgatgcgaataggaaataatgtttttgaggagataatgggaggaaaagatagaaacaatatt 9289103  T
Q  131 tagtacactttcttgtatcacccgcaaatttgggatagtaaattgtcatgaatccttttagtggtttgatgaaaagttaaagttgaataaaaatctgtgt 230  Q
    |||||||| |||||||| |||  |||| ||||||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||| |||    
T  9289102 tagtacaccttcttgtaccacttgcaagtttgggacagtaaattgccatgaatcc---tagtggtttgatgaaaagttaaagttgaataaaaatctttgt 9289006  T
Q  231 taagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9289005 taagagaggattttttggaagttgatatgaatgtgctctctttgattca 9288957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 9288889 - 9288782
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||     
T  9288889 ctgttaaaattgaaagttacataataagttgaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagtattgcctttattaataa 9288790  T
Q  446 gtatagat 453  Q
    ||||||||    
T  9288789 gtatagat 9288782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 8210680 - 8210581
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  8210680 ctgttaaaattggaagttacataataagtggaagttagaggataaaattgaaatgtaaaataggctacaccaaaccaaaaagtagtgcctttattaatag 8210581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 506
Target Start/End: Complemental strand, 9289321 - 9289267
Alignment:
Q  452 ataattatctaatcaaataattatctcatgtatgatataaatttcgatacctttg 506  Q
    ||||| |||||||||||||||  |||||| |||||||||||||| ||||||||||    
T  9289321 ataatgatctaatcaaataatggtctcatctatgatataaatttagatacctttg 9289267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 38979182 - 38979066
Alignment:
Q  19 tgatttccctcaaagcaatctctttccatttcaccaatttaattttgaagtgatgtgaataggaaataatgtttttgagtagatattgggaggaaaagat 118  Q
    ||||||||||  ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38979182 tgatttcccttgaagcaatctctttccatttcaccaattt-----tgaagtgatgtgaataggaaataatgtttttgagtagataatgggaggaaaagat 38979088  T
Q  119 agaaacaatatttagtacactt 140  Q
    ||||||||||||||||||||||    
T  38979087 agaaacaatatttagtacactt 38979066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 38974623 - 38974514
Alignment:
Q  346 ctgttaaaattggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaatag 445  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  38974623 ctgttaaaattggaagttacataatgagtggaagttaaaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttatatatag 38974524  T
Q  446 gtatagataa 455  Q
     |||||||||    
T  38974523 atatagataa 38974514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 38974744 - 38974657
Alignment:
Q  192 tggtttgatgaaaagttaaagttgaataaaaatctgtgttaagaggggattttttggaagttgatatgaatgtgctctctttgattca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  38974744 tggtttgatgaaaagttaaagttgaataaaaatctgtgttaagaggagatttttcggaagttgatatgaatgtgctctctttgattca 38974657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 38979293 - 38979238
Alignment:
Q  448 atagataattatctaatcaaataattatctcatgtatgatataaatttcgatacct 503  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  38979293 atagataattatctaatcaaataatgatctcatgtatgatataaatttagatacct 38979238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 44484767 - 44484812
Alignment:
Q  375 ggaagttagaggataaaattggaatgtaaaataggctacaccaaac 420  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||    
T  44484767 ggaagttagatggtaagattggaatctaaaataggctacaccaaac 44484812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 458
Target Start/End: Original strand, 23196117 - 23196180
Alignment:
Q  395 ggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagataatta 458  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  23196117 ggaatgtaaaataggctacaccaaaccaaaaagtattgcctttattaataggtatagattatta 23196180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 41612887 - 41612838
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagat 453  Q
    ||||||||||||||||||||  |||| ||||||||| |||||||||||||||    
T  41612887 aaaataggctacaccaaacc--aaagtattgcctttattaataggtatagat 41612838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 19832258 - 19832213
Alignment:
Q  407 aggctacaccaaaccaaaaagaattgcctttgttaataggtatagata 454  Q
    |||||||||||||  |||||| ||||||||| ||||||||||||||||    
T  19832258 aggctacaccaaa--aaaaagtattgcctttattaataggtatagata 19832213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 21116945 - 21116992
Alignment:
Q  406 taggctacaccaaaccaaaaagaattgcctttgttaataggtatagata 454  Q
    |||||||||||||| ||||| | ||||||||| ||||||||||||||||    
T  21116945 taggctacaccaaaacaaaa-gtattgcctttattaataggtatagata 21116992  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 18564864 - 18564779
Alignment:
Q  357 ggaagttacataataagtggaagttagaggataaaattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaata 444  Q
    |||||||| |||||  |||||||||||||| ||| |||||||| |||| ||||||||||||||  |||||| ||||||||| ||||||    
T  18564864 ggaagttaaataatgggtggaagttagagggtaagattggaatctaaagtaggctacaccaaa--aaaaagtattgcctttattaata 18564779  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 39443894 - 39443955
Alignment:
Q  391 aattggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagat 453  Q
    |||||||||||||||||||||||||||||  |||||  ||||| ||| |||||||||||||||    
T  39443894 aattggaatgtaaaataggctacaccaaaagaaaaa-tattgcatttattaataggtatagat 39443955  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 45623370 - 45623321
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagat 453  Q
    ||||||||||||||||||  | |||| ||||||||| |||||||||||||||    
T  45623370 aaaataggctacaccaaa--agaaagtattgcctttattaataggtatagat 45623321  T

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Target: scaffold0214 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 11564 - 11623
Alignment:
Q  393 ttggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagata 454  Q
    ||||||| |||||||||||||||||||  |  ||| ||||||||| ||||||||||||||||    
T  11564 ttggaatctaaaataggctacaccaaa--accaagtattgcctttattaataggtatagata 11623  T

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Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 25864 - 25923
Alignment:
Q  393 ttggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagata 454  Q
    ||||||| |||||||||||||||||||  |  ||| ||||||||| ||||||||||||||||    
T  25864 ttggaatctaaaataggctacaccaaa--accaagtattgcctttattaataggtatagata 25923  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 23158166 - 23158115
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagataa 455  Q
    |||||||||||||||||||  ||||| |||| |||| |||||||||||||||||    
T  23158166 aaaataggctacaccaaac--aaaagtattgtctttattaataggtatagataa 23158115  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 20014775 - 20014729
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtata 450  Q
    |||||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  20014775 aaaataggctacaccaaac--aaaagtattgcctttattaataggtata 20014729  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 31575113 - 31575163
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagata 454  Q
    ||||||||||||| |||||||||  | ||||||||| ||||||||||||||||    
T  31575113 aaaataggctacatcaaaccaaa--gtattgcctttattaataggtatagata 31575163  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 21686110 - 21686159
Alignment:
Q  402 aaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagat 453  Q
    |||| |||||||||||||  |||||| ||||||||| |||||||||||||||    
T  21686110 aaaaaaggctacaccaaa--aaaaagtattgcctttattaataggtatagat 21686159  T

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Target: scaffold0537 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 11375 - 11311
Alignment:
Q  392 attggaatgtaaaataggctacaccaaaccaaaaagaattgcctttgttaataggtatagataatt 457  Q
    ||||||| |||||||||||||||| |||    |||| ||||||||| |||||||||||||||||||    
T  11375 attggaaagtaaaataggctacacgaaa-agtaaagtattgcctttattaataggtatagataatt 11311  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 80017 - 79965
Alignment:
Q  406 taggctacaccaaaccaaaaagaattgcctttgttaataggtatagataattat 459  Q
    |||||||||||||| ||||| | ||||||||| ||||||||||||||| |||||    
T  80017 taggctacaccaaaacaaaa-gtattgcctttattaataggtatagattattat 79965  T

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