View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11561_low_31 (Length: 201)

Name: NF11561_low_31
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11561_low_31
NF11561_low_31
[»] chr4 (21 HSPs)
chr4 (10-171)||(3815701-3815862)
chr4 (30-171)||(3808147-3808288)
chr4 (10-100)||(3985027-3985117)
chr4 (10-100)||(4023103-4023193)
chr4 (33-100)||(3922044-3922111)
chr4 (110-173)||(3985187-3985250)
chr4 (10-100)||(3957503-3957593)
chr4 (37-100)||(4000211-4000274)
chr4 (116-161)||(3936905-3936950)
chr4 (32-100)||(3935392-3935460)
chr4 (30-100)||(3799922-3799992)
chr4 (30-100)||(4216869-4216939)
chr4 (110-171)||(3935258-3935319)
chr4 (110-171)||(3957366-3957427)
chr4 (110-170)||(4008105-4008165)
chr4 (112-171)||(3921910-3921969)
chr4 (30-103)||(3998960-3999033)
chr4 (112-171)||(4023265-4023324)
chr4 (110-170)||(3999100-3999160)
chr4 (19-64)||(4000157-4000202)
chr4 (110-171)||(4000347-4000408)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 3815701 - 3815862
Alignment:
Q  10 gagatgaagaatcatatcaacctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaaccagcgtta 109  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||  ||||    
T  3815701 gagatcaataatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacatacattgcttcatcagaaccaaagtta 3815800  T
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  3815801 gcatacttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaa 3815862  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 3808147 - 3808288
Alignment:
Q  30 cctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaaccagcgttagcaaacttcattaaattgat 129  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||  ||||||| ||||||||||||||||    
T  3808147 cctttgttgtcttgtactcaaaccactctggaacattacttccaggatacacatacattgcttcatcagaaccaaagttagcatacttcattaaattgat 3808246  T
Q  130 ttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  3808247 ttgaacattcaacccaacatttatgagagaactttcatccaa 3808288  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 3985027 - 3985117
Alignment:
Q  10 gagatgaagaatcatatcaacctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  3985027 gagatcaacaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatatacatacactgcttgataagaa 3985117  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 4023103 - 4023193
Alignment:
Q  10 gagatgaagaatcatatcaacctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||| || |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||    
T  4023103 gagatcaacaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacatacactgcttgataagaa 4023193  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 3922111 - 3922044
Alignment:
Q  33 ttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  3922111 ttgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaa 3922044  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 3985187 - 3985250
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaatt 173  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3985187 gcaaactccatcaaattgatttgaagattcaacccaatatttatgagagaacgttcatccaatt 3985250  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 3957593 - 3957503
Alignment:
Q  10 gagatgaagaatcatatcaacctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||| || |||||||||| ||| || |||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3957593 gagatcaataatcatatcatcctgtgctgtcctgtacttgaaccactctggaacactacttccaggatacaaatacactgcttgataagaa 3957503  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 4000211 - 4000274
Alignment:
Q  37 tgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||    
T  4000211 tgtcttgtactccaaccactctggaacactacttccaggatatacatacaatgcttgataagaa 4000274  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 3936950 - 3936905
Alignment:
Q  116 ttcattaaattgatttgaacattcaacccaatatttatgagagaac 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3936950 ttcattaaattgatttgaacattcaacccaatatttatgagagaac 3936905  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 3935460 - 3935392
Alignment:
Q  32 tttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  3935460 tttgttgtcttgtactcaaaccaatctggaacactacttccagaatacacatacaatgcttgataagaa 3935392  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 3799922 - 3799992
Alignment:
Q  30 cctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||  |||||||| ||||    
T  3799922 cctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa 3799992  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 4216869 - 4216939
Alignment:
Q  30 cctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||  |||||||| ||||    
T  4216869 cctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa 4216939  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 3935319 - 3935258
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    ||||||||||| ||||||||||| | |||||||||||||||||| |||||||| ||||||||    
T  3935319 gcaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaacgctcatccaa 3935258  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 3957427 - 3957366
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||| | |||||||||    
T  3957427 gcaaacttcatcaaattgatctgcacattcaacccaatatttatgagagagcattcatccaa 3957366  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 4008105 - 4008165
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatcca 170  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||| |||||    
T  4008105 gcaaacttcattatattgatttgaatattcaactcaatatttataagagaacgtttatcca 4008165  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 3921969 - 3921910
Alignment:
Q  112 aaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    ||||||||| ||||||||||| | |||||||||||||||||| |||||| ||||||||||    
T  3921969 aaacttcatcaaattgatttgcagattcaacccaatatttatcagagaaagttcatccaa 3921910  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 3998960 - 3999033
Alignment:
Q  30 cctttgttgtcttgtactccaaccactctggaacactacttccaggatacatatacactgcttgatcagaacca 103  Q
    |||||||||| |||||||||||| |||||| |||||| ||||| ||||| | ||||| |||||||| |||||||    
T  3998960 cctttgttgttttgtactccaacgactctgaaacactgcttcctggataaacatacaatgcttgataagaacca 3999033  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 4023265 - 4023324
Alignment:
Q  112 aaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    |||||| || ||||| ||||| | ||||||||||||||||||||||||| ||||||||||    
T  4023265 aaactttatcaaattcatttgcagattcaacccaatatttatgagagaatgttcatccaa 4023324  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 3999100 - 3999160
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatcca 170  Q
    |||||||| |||| ||||||||||| ||||||| ||| ||||||| ||||||||| |||||    
T  3999100 gcaaactttattatattgatttgaatattcaactcaacatttatgtgagaacgtttatcca 3999160  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4000157 - 4000202
Alignment:
Q  19 aatcatatcaacctttgttgtcttgtactccaaccactctggaaca 64  Q
    |||||| ||| ||| ||||||||||||||||||||||||| |||||    
T  4000157 aatcatgtcatcctctgttgtcttgtactccaaccactctcgaaca 4000202  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 4000347 - 4000408
Alignment:
Q  110 gcaaacttcattaaattgatttgaacattcaacccaatatttatgagagaacgttcatccaa 171  Q
    |||||||| |||| ||||||||  | ||| ||||||||||||| ||||||| ||||||||||    
T  4000347 gcaaacttgattagattgattttcatattgaacccaatatttacgagagaatgttcatccaa 4000408  T

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