View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_low_6 (Length: 493)
Name: NF11561_low_6
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 48680186 - 48679706
Alignment:
| Q |
1 |
aggcttgttggctttgcatgtgtcgaagggatatttttctcaggaaggtagttatctcaagnnnnnnncaacttatagaacttcccttgtttctttttca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48680186 |
aggcttgttggctttgcatgtgtcgaggggatatttttctcaggaaggtagttatctcaagaaaaaaacaacttatagaacttcccttgtttctttttca |
48680087 |
T |
|
| Q |
101 |
aaagttgtaacgagatttgtcctatttacttaacttgtttcccttcttttcaattggggtttgctttcagcttctgtgccatattttggcttaaaaagag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48680086 |
aaagttgtaacgagttttgtcctatttacttaacttgtttcccttcttttcaattggggtttgctttcagcttctgtgccatattttggcttaaaaagag |
48679987 |
T |
|
| Q |
201 |
aggattaatgccaggtctgacattctcaaatgagctaatctctagagacgagggtcttcactgtgattttgcttgcatgctatacaggtagtattggtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48679986 |
aggattaatgccaggtctgacattctcaaatgagctaatctctagagacgagggtcttcactgtgattttgcttgcatgctatacaggtagtattggtta |
48679887 |
T |
|
| Q |
301 |
aatttttcattcatttagtataaataaatgaagttgtataaggatgtaatgttttgatattagtattggatgattcattggattgcaattgcctgcagct |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48679886 |
aatttttcattcatttagtataaataaatgaagctgtataaggatgtaatgttttgatattagtattggatgattcaatggattgcaattgcctgcagct |
48679787 |
T |
|
| Q |
401 |
tgttactgagacagctagattccgagcgggttcaaaatattgtacacgaagctgttgaaattgaaactgagtttgtctgtg |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48679786 |
tgttactgagacagctagattccgagcgggttcaaaatattgtacacgaagctgttgaaattgaaactgagtttgtctgtg |
48679706 |
T |
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