View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11561_low_8 (Length: 427)
Name: NF11561_low_8
Description: NF11561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11561_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 8341659 - 8341332
Alignment:
| Q |
11 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaatttagcaa |
110 |
Q |
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| T |
8341659 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcgtatattcagtagcgtagtgttcaataagatgcaacttctgatttagcaa |
8341560 |
T |
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| Q |
111 |
caaagtttaatagaccaatttaagcttggattaaatgaaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaa |
210 |
Q |
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| T |
8341559 |
caaagtttaatagaccaaattaagcttggattaaatgaaaccttgtcattctgaattatgagaggttggagcaagggacatttctgaatcaagtggagaa |
8341460 |
T |
|
| Q |
211 |
gagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgttt |
310 |
Q |
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| T |
8341459 |
gagaatttgagttaaaccaggaaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgttt |
8341360 |
T |
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| Q |
311 |
gtacacgatatcaagtagtaattagtac |
338 |
Q |
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| T |
8341359 |
gtacacgatatcaagtagtaattagtac |
8341332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 148 - 338
Target Start/End: Complemental strand, 17478469 - 17478279
Alignment:
| Q |
148 |
aaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaag |
247 |
Q |
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| T |
17478469 |
aaaccttgtcgttctgaattataagaacttgcagcatcggacatttctgaagcaagctgagcagagaattggagttaaaccagagaagaatgagctctag |
17478370 |
T |
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| Q |
248 |
gcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtac |
338 |
Q |
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| T |
17478369 |
acgtatcaaatagtgaaattcttgaaaaagtagattgtggggttcaccaagcagccactgtttgtacaagacaccaactactaattagtac |
17478279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 338
Target Start/End: Original strand, 32849170 - 32849388
Alignment:
| Q |
120 |
atagaccaatttaagcttggattaaatgaaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttg |
219 |
Q |
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| T |
32849170 |
atagaccagattaaggttggattaaactaa-ccttgttcttttgaatcatgagaacttgaagcataggacattcttgaagcaagttgagcagataattga |
32849268 |
T |
|
| Q |
220 |
agttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtac-acga |
318 |
Q |
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| ||||||||||||||| |||||| ||||||| ||||| |||||||||||||| | | |||||||||||| | |||||||||||||||||| | | |
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| T |
32849269 |
atctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaagcagccactgtttgtactagaa |
32849368 |
T |
|
| Q |
319 |
tatcaagtagtaattagtac |
338 |
Q |
| |
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||||||||||||||||||| |
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| T |
32849369 |
catcaagtagtaattagtac |
32849388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 338
Target Start/End: Complemental strand, 4442155 - 4441976
Alignment:
| Q |
159 |
ttctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaat |
258 |
Q |
| |
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||||||||| ||||| |||| |||| |||||||| |||| |||| || ||| |||| ||||||||||||||||||| |||||| | ||| ||||| |
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| T |
4442155 |
ttctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagataattggagttaaaccagggaagaatgagctctaaatgaagcaaat |
4442056 |
T |
|
| Q |
259 |
attgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtac |
338 |
Q |
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| ||||||||||||||| | ||| | |||||||| ||||||||||||| || ||| |||||||||| ||||||||| |
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| T |
4442055 |
agcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagcaattagtac |
4441976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 17478637 - 17478544
Alignment:
| Q |
11 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaatt |
104 |
Q |
| |
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| T |
17478637 |
caaaggacttgaataagatgcaatattcatagtaatgaattaatcatgttatatattaagtggtgtattgtgcaataagataaaacttctaatt |
17478544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 24951964 - 24952013
Alignment:
| Q |
149 |
aaccttgtcattctgaattatgagagcttggagcaagggacatttctgaa |
198 |
Q |
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| T |
24951964 |
aaccttgtcattatgaattatgagagcttgaagtataggacatttctgaa |
24952013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 8366420 - 8366506
Alignment:
| Q |
20 |
tgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaattta |
106 |
Q |
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| T |
8366420 |
tgaataagatgcaatattcataggaatgaattaatcatgttatttattcagtggtgtactgttcaataagatgctacttctaattta |
8366506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 8382421 - 8382505
Alignment:
| Q |
20 |
tgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaattta |
106 |
Q |
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| T |
8382421 |
tgaataagatgcaatattcat--taatgaattaatcatgttatatattaagtggtgtactgttcaataagatgctacttctaattta |
8382505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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