View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11562_low_1 (Length: 459)
Name: NF11562_low_1
Description: NF11562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11562_low_1 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 89528 - 89107
Alignment:
| Q |
12 |
atgaaaggggaggagtggctcgaaaatgtataaagtagaaagaaggtgaagagaattcttaataagtcaatagaactctttaaccgaatnnnnnnnnnnn |
111 |
Q |
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| T |
89528 |
atgaaaggggaggagtggctcgaaaatgtatcaagtagaaagaaggtgaagagaattcttgataactcaatagaactctttaaccgaataaaaaaaaa-- |
89431 |
T |
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| Q |
112 |
nnntattcacttgagagttatggttgtagttcacaaaaacctccaagggatcaaacaattgagagaagctctttgaaatatataaacattgttgagaagc |
211 |
Q |
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| T |
89430 |
---taatcacttgacagttatggttgtagttcacaataacctccaagtgatcaaacaattgagagaagctctttgaaatatataaacattgttgagaagc |
89334 |
T |
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| Q |
212 |
tcttgtttgttatcaatgtgtcggtgtttcaaacatttaggtcttctaaaagctggttttctaactgatcaccactttgttgatgagttgtcttcgttta |
311 |
Q |
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| T |
89333 |
tcttgtttgttatcaatgtgtcggtgtttcaaacatttaggccttctaaaagctggttttctaactgatcaccactttgttgatgagttgtcttcgttta |
89234 |
T |
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| Q |
312 |
ttgtgattttctgtctatagaccttgccgaatctatgatgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatcaaa |
411 |
Q |
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| T |
89233 |
ttgtgattttctgtctatagaccttgccgaatctatgatgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatcaaa |
89134 |
T |
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| Q |
412 |
atgagagacacaaaatttgggacaagtgc |
440 |
Q |
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| T |
89133 |
atgagag--acaaaatttgggacaagtgc |
89107 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 1600839 - 1600780
Alignment:
| Q |
349 |
atgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatc |
408 |
Q |
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| T |
1600839 |
atgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatc |
1600780 |
T |
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