View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11562_low_2 (Length: 364)

Name: NF11562_low_2
Description: NF11562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11562_low_2
NF11562_low_2
[»] chr4 (13 HSPs)
chr4 (151-348)||(54157276-54157473)
chr4 (11-161)||(54157108-54157258)
chr4 (24-137)||(53869107-53869224)
chr4 (151-264)||(22405281-22405392)
chr4 (187-272)||(54158026-54158108)
chr4 (162-225)||(23638364-23638427)
chr4 (161-220)||(53994435-53994494)
chr4 (170-224)||(42576625-42576679)
chr4 (161-225)||(53993668-53993732)
chr4 (170-224)||(13265521-13265575)
chr4 (167-229)||(41185556-41185618)
chr4 (170-211)||(6944746-6944787)
chr4 (170-211)||(38942011-38942052)
[»] chr7 (6 HSPs)
chr7 (161-272)||(48604981-48605089)
chr7 (161-272)||(12263299-12263407)
chr7 (170-221)||(20009072-20009123)
chr7 (170-221)||(20123261-20123312)
chr7 (198-271)||(48607869-48607939)
chr7 (170-210)||(36671077-36671117)
[»] chr6 (6 HSPs)
chr6 (151-334)||(11324746-11324936)
chr6 (161-334)||(13225089-13225269)
chr6 (152-272)||(13220877-13220994)
chr6 (151-225)||(30525627-30525701)
chr6 (170-221)||(25344859-25344910)
chr6 (302-334)||(23286100-23286132)
[»] chr3 (17 HSPs)
chr3 (170-272)||(5963810-5963909)
chr3 (161-334)||(15273917-15274097)
chr3 (161-334)||(40872927-40873107)
chr3 (161-272)||(40877209-40877317)
chr3 (161-272)||(15269709-15269817)
chr3 (170-222)||(33639637-33639689)
chr3 (170-229)||(32982281-32982340)
chr3 (170-225)||(48208350-48208405)
chr3 (170-217)||(54694943-54694990)
chr3 (170-208)||(23310513-23310551)
chr3 (231-272)||(5963767-5963808)
chr3 (162-211)||(23516958-23517007)
chr3 (170-225)||(48207612-48207667)
chr3 (170-224)||(17343745-17343799)
chr3 (161-214)||(31897968-31898021)
chr3 (161-214)||(31913677-31913730)
chr3 (161-214)||(31947325-31947378)
[»] chr2 (9 HSPs)
chr2 (151-269)||(8194215-8194330)
chr2 (161-224)||(528915-528978)
chr2 (161-224)||(529597-529660)
chr2 (175-219)||(8193741-8193785)
chr2 (151-206)||(13545369-13545424)
chr2 (170-217)||(29156165-29156212)
chr2 (170-207)||(34238830-34238867)
chr2 (170-207)||(34239582-34239619)
chr2 (170-206)||(41320022-41320058)
[»] chr1 (14 HSPs)
chr1 (170-225)||(19990289-19990344)
chr1 (170-225)||(16073303-16073358)
chr1 (170-283)||(30661786-30661895)
chr1 (170-217)||(28313853-28313900)
chr1 (170-211)||(4968928-4968969)
chr1 (170-225)||(28314559-28314614)
chr1 (170-224)||(42023219-42023273)
chr1 (170-211)||(39773404-39773445)
chr1 (170-206)||(6632087-6632123)
chr1 (170-210)||(16518499-16518539)
chr1 (170-206)||(17238478-17238514)
chr1 (170-214)||(19991042-19991086)
chr1 (161-213)||(29981274-29981326)
chr1 (79-127)||(36877383-36877431)
[»] chr8 (4 HSPs)
chr8 (161-205)||(5389677-5389721)
chr8 (151-205)||(5390170-5390224)
chr8 (171-272)||(26878470-26878567)
chr8 (170-211)||(10296943-10296984)
[»] chr5 (14 HSPs)
chr5 (170-214)||(19186447-19186491)
chr5 (161-225)||(42948158-42948222)
chr5 (60-139)||(15047256-15047336)
chr5 (162-224)||(8609943-8610005)
chr5 (52-139)||(15014487-15014575)
chr5 (161-224)||(4927758-4927821)
chr5 (161-224)||(8609205-8609268)
chr5 (170-221)||(10555392-10555443)
chr5 (170-221)||(23237054-23237105)
chr5 (170-221)||(23244343-23244394)
chr5 (170-221)||(33766498-33766549)
chr5 (170-221)||(42994490-42994541)
chr5 (163-205)||(19186991-19187033)
chr5 (192-225)||(15437336-15437369)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 151 - 348
Target Start/End: Original strand, 54157276 - 54157473
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54157276 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaatt 54157375  T
Q  251 cataataattgttaaggtggggactttttactctctccacggcagtacaccatacacaacaattcacaattatctttctgacaatacgtatccattat 348  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54157376 cataataattgttaaggtggggattttttactctctccacggcagtacaccatacacaacaattcacaattatctttctgacaatacgtatcaattat 54157473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 54157108 - 54157258
Alignment:
Q  11 cacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagacgtgtcattcaccacattaaatagctatttatctaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54157108 cacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagatgtgtcattcaccacattaaatagctatttatctaac 54157207  T
Q  111 catccaacaattatgtaaagcaatatgcaaactcaatatggagagagagag 161  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54157208 catccaacaattatgtaaagcaatatgcaagctcaatatggagagagagag 54157258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 53869224 - 53869107
Alignment:
Q  24 atgctaaatgttggtattcaaaaagttt--ggatgaaatcataataacaagacgtgtca--ttcaccacattaaatagctatttatctaaccatccaaca 119  Q
    |||||||||||||||||||| |||||||  | |||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||| ||||    
T  53869224 atgctaaatgttggtattcataaagtttttgaatgaaatcataataacaagacgagtcacattcaccacattaaatagctatttatttaaccatcaaaca 53869125  T
Q  120 attatgtaaagcaatatg 137  Q
    ||||| || |||||||||    
T  53869124 attatctacagcaatatg 53869107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 22405392 - 22405281
Alignment:
Q  151 gagagagagag-gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaat 249  Q
    ||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||   |||| ||||||  ||||||||||    
T  22405392 gagagagagagagatccattgacttcaagagtaagtctaaatacttactccaaatcttgaccattcattttaat---aataattaatggttgtgattaat 22405296  T
Q  250 tcataataattgtta 264  Q
    |||||||||||||||    
T  22405295 tcataataattgtta 22405281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 54158108 - 54158026
Alignment:
Q  187 taaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataattgttaaggtgggg 272  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||||||    
T  54158108 taaagacttgctccaaatcctgacccttcattttaataataat---taatggctgtgattaattcataataattgttaaggtgggg 54158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 23638364 - 23638427
Alignment:
Q  162 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  23638364 gatccatcaactccaagagtaagtctaaagacttactccaaatattgacccttgatattaataa 23638427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 53994494 - 53994435
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 220  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| |||||||| |||||    
T  53994494 ggatccattgactccaggagtaagtctaaagagttactccaaatcatgacccttaatttt 53994435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 42576679 - 42576625
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  42576679 gactccaagagtaagtttaaaaacttactccaaatattgacccttgattttaata 42576625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 53993668 - 53993732
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    ||||||||  |||||||||||||||||||||| ||||||| |||| || || || ||||||||||    
T  53993668 ggatccattaactccaagagtaagtctaaagagttactcccaatcatggcctttaattttaataa 53993732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 13265521 - 13265575
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||||||||||| |||   ||||||||||||||||||| || |||||||||    
T  13265521 gactccaagagtaagtgtaatatcttactccaaatcttgacctttaattttaata 13265575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 41185618 - 41185556
Alignment:
Q  167 atcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaat 229  Q
    |||||||||||||| || |||| ||| ||||||||||||||| || || ||||||||| ||||    
T  41185618 atcgactccaagagcaaatctatagaattactccaaatcttggcctttaattttaatatcaat 41185556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 6944746 - 6944787
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  6944746 gactccaagagtaagtgtaataacttactccaaatcttgacc 6944787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 38942052 - 38942011
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  38942052 gactccaagagtaagtgtaataacttactccaaatcttgacc 38942011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 48604981 - 48605089
Alignment:
Q  161 ggatccatcgactccaagagtaa-gtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataat 259  Q
    |||||||| |||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||   |||| ||||||  |||||||||||| |||||||    
T  48604981 ggatccattgacttcaagagtaaagtctaaacacttactctaaatcttgacccttcattttaat---aatacttaatggttgtgattaattc-taataat 48605076  T
Q  260 tgttaaggtgggg 272  Q
    |||||||||||||    
T  48605077 tgttaaggtgggg 48605089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 12263407 - 12263299
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  12263407 ggatccattgactccaagagtaagtctaaacacttactacaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 12263311  T
Q  261 gttaaggtgggg 272  Q
    |||| |||||||    
T  12263310 gttagggtgggg 12263299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 20009123 - 20009072
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  20009123 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 20009072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 20123312 - 20123261
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| |||||||    
T  20123312 gactccaagagtaagtctaaagagttactccacatcctcaccctccatttta 20123261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 48607939 - 48607869
Alignment:
Q  198 tccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataattgttaaggtggg 271  Q
    ||||||||||  ||||||||||||| || |||   ||||||  || ||||||||||||||||||||||||||||    
T  48607939 tccaaatcttagcccttcattttaaaaataat---taatgatcgtaattaattcataataattgttaaggtggg 48607869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 36671117 - 36671077
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgac 210  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  36671117 gactccaagagtaagtgtaataacttactccaaatcttgac 36671077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 11324746 - 11324936
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaatt 250  Q
    ||||||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  |||||||||||    
T  11324746 gagagagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaatt 11324842  T
Q  251 cataataattgttaaggtggggactttttactctctccacggcagtaca-----------ccatacacaacaattcacaattatctttctgacaa 334  Q
    ||   ||||||||| |||||||   |||| |||||||||| |||| |||           | |||||||||||||||||||||||||||||||||    
T  11324843 caatttaattgttagggtgggg-tgttttcctctctccacagcagcacacgtttatcctccaatacacaacaattcacaattatctttctgacaa 11324936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 334
Target Start/End: Complemental strand, 13225269 - 13225089
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  13225269 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 13225173  T
Q  261 gttaaggtggggactttttactctctccacggcagtaca-----------ccatacacaacaattcacaattatctttctgacaa 334  Q
    |||| |||||||   |||| |||||||||| |||| |||           | |||||||||||||||||||||||||||||||||    
T  13225172 gttagggtgggg-tgttttcctctctccacagcagcacacgtttatcctccaatacacaacaattcacaattatctttctgacaa 13225089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 13220877 - 13220994
Alignment:
Q  152 agagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattc 251  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  ||||||||||||    
T  13220877 agagagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaattc 13220973  T
Q  252 ataataattgttaaggtgggg 272  Q
    |   ||||||||| |||||||    
T  13220974 aatttaattgttagggtgggg 13220994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 30525627 - 30525701
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||||| ||||||| |||||||| ||||||| |||||| |||||||||| | |||||  ||||||||||||    
T  30525627 gagagagagatgatccattgactccaatagtaagtgtaaagagttactccaaaccatgaccactcattttaataa 30525701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 25344859 - 25344910
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  25344859 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 25344910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 23286100 - 23286132
Alignment:
Q  302 atacacaacaattcacaattatctttctgacaa 334  Q
    ||||||||||| |||||||||||||||||||||    
T  23286100 atacacaacaactcacaattatctttctgacaa 23286132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 5963909 - 5963810
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataattgttaaggtg 269  Q
    |||||||||||||| |||||| ||||||||||||||| ||  ||||||||||| || |||   |||||  ||||||||||||||||||||||||||||||    
T  5963909 gactccaagagtaactctaaacacttactccaaatctagattcttcattttaaaaataat---taatggttgtgattaattcataataattgttaaggtg 5963813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 334
Target Start/End: Complemental strand, 15274097 - 15273917
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  15274097 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 15274001  T
Q  261 gttaaggtggggactttttactctctccacggcagtaca-----------ccatacacaacaattcacaattatctttctgacaa 334  Q
    |||| |||||||   |||| |||||||||| |||| |||           | |||||||||||||||||||||||||||||||||    
T  15274000 gttagggtgggg-tgttttcctctctccacagcagcacacgtttatcctccaatacacaacaattcacaattatctttctgacaa 15273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 334
Target Start/End: Original strand, 40872927 - 40873107
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  40872927 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 40873023  T
Q  261 gttaaggtggggactttttactctctccacggcagtaca-----------ccatacacaacaattcacaattatctttctgacaa 334  Q
    |||| |||||||   |||| |||||||||| |||| |||           | |||||||||||||||||||||||||||||||||    
T  40873024 gttagggtgggg-tgttttcctctctccacagcagcacacgtttatcctccaatacacaacaattcacaattatctttctgacaa 40873107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 40877317 - 40877209
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  40877317 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 40877221  T
Q  261 gttaaggtgggg 272  Q
    |||| |||||||    
T  40877220 gttagggtgggg 40877209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 15269709 - 15269817
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataatt 260  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||    ||| ||||||  |||||||||||||   |||||    
T  15269709 ggatccattgactccaagagtaagtctaaacacttacttcaaatcatgaccattcattttaat---tataattaatggttgtgattaattcaatttaatt 15269805  T
Q  261 gttaaggtgggg 272  Q
    |||| |||||||    
T  15269806 gttagggtgggg 15269817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 33639689 - 33639637
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaa 222  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  33639689 gactccaagagtaagtctaaagacttactccagatcttaacccttcattttaa 33639637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 32982281 - 32982340
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaat 229  Q
    ||||||||||||||||||| ||||||||||||||||||| || || ||| ||||| ||||    
T  32982281 gactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatcaat 32982340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 48208405 - 48208350
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||    
T  48208405 gactccaagagtaactcaaaagaattactccaaatcttaacccttcatcttaataa 48208350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 54694943 - 54694990
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 217  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||    
T  54694943 gactccaagagtaactcaaaagagttactccaaatcttgacccttcat 54694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 23310513 - 23310551
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttg 208  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  23310513 gactccaagagtaagtctatagacttactccaaatcttg 23310551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 5963808 - 5963767
Alignment:
Q  231 gttaatgactgtgattaattcataataattgttaaggtgggg 272  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  5963808 gttaatggctgtcattaattcataataattgttaaggtgggg 5963767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 23517007 - 23516958
Alignment:
Q  162 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    |||| ||||||||||||||||| | |||||| ||||||||||||||||||    
T  23517007 gatctatcgactccaagagtaaatgtaaagagttactccaaatcttgacc 23516958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 48207612 - 48207667
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||||| |||||||||||||||| |||||||||  ||| ||||| |||||||    
T  48207612 gactccaagaataagtctaaagacttattccaaatctaaacctttcatcttaataa 48207667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 17343799 - 17343745
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||||||||||| |||   ||||||||||||||||||| || |||||||||    
T  17343799 gactccaagagtaagtgtaatatcttactccaaatcttgacctttaattttaata 17343745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 31898021 - 31897968
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 214  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31898021 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31897968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 31913730 - 31913677
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 214  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31913730 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31913677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 31947378 - 31947325
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 214  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31947378 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31947325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 8194330 - 8194215
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaatt 250  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |||||||||||| || |||||||||| |||     || ||||||  |||||||||||    
T  8194330 gagagagaagggatccattgactccaagagtaagtctaaagagttactccaaatcatggcccttcatttgaat---ggtaattaatggttgtgattaatt 8194234  T
Q  251 cataataattgttaaggtg 269  Q
     ||||||||||||| ||||    
T  8194233 gataataattgttatggtg 8194215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 528915 - 528978
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  528915 ggatccatggactccaagagtaagtataaagacttactccaaatcttgaccattaattttaata 528978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 529660 - 529597
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||  || || |||||||||    
T  529660 ggatccattgactccaagagtaagtataaagacttactccaaatcttagccattaattttaata 529597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 8193741 - 8193785
Alignment:
Q  175 caagagtaagtctaaagacttactccaaatcttgacccttcattt 219  Q
    |||||||||||||||||| |||||||||||| || ||||||||||    
T  8193741 caagagtaagtctaaagagttactccaaatcatggcccttcattt 8193785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 13545424 - 13545369
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatct 206  Q
    ||||||||||||||   | |||||||||||||||| || |||||||||||||||||    
T  13545424 gagagagagaggatattttgactccaagagtaagtttatagacttactccaaatct 13545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 29156165 - 29156212
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 217  Q
    |||||||||||||| || ||||| |||||||||||| |||||||||||    
T  29156165 gactccaagagtaactcaaaagagttactccaaatcctgacccttcat 29156212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 34238830 - 34238867
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatctt 207  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  34238830 gactccaaaagtaagtctatagacttactccaaatctt 34238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 34239619 - 34239582
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatctt 207  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  34239619 gactccaagagtaagtctatagatttactccaaatctt 34239582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 41320022 - 41320058
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatct 206  Q
    |||||||||||||||| || |||||||||||||||||    
T  41320022 gactccaagagtaagtttatagacttactccaaatct 41320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 19990289 - 19990344
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  19990289 gactccaagagtaagtctaaagacttactccaaatctaaacccttcatcttaataa 19990344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 16073358 - 16073303
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||| |||||||    
T  16073358 gactccaagagtaagtctaaagacttattccaaatctaaacccttcatcttaataa 16073303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 283
Target Start/End: Complemental strand, 30661895 - 30661786
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataattgttaaggtg 269  Q
    ||||| ||||||||||||  ||||||| |||||||| ||| |||||||||||||   |||| |||||| || ||||||||| |||||||||||||  |||    
T  30661895 gactctaagagtaagtctttagacttagtccaaatcatgatccttcattttaat---aataattaatggctatgattaatt-ataataattgttagtgtg 30661800  T
Q  270 gggactttttactc 283  Q
     || ||||||||||    
T  30661799 aggcctttttactc 30661786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 28313853 - 28313900
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 217  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||    
T  28313853 gactccaagagtaactcaaaagagttactccaaatcttgacccttcat 28313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 4968969 - 4968928
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  4968969 gactccaagagtaagtctataaacttactccaaatcttgacc 4968928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 28314614 - 28314559
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||||||||| || ||||| |||||||||||||  ||||||||| |||||||    
T  28314614 gactccaagagtaactcaaaagatttactccaaatctaaacccttcatcttaataa 28314559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 42023219 - 42023273
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||||||||||| |||  |||||||||||||||||||| || ||| |||||    
T  42023219 gactccaagagtaagtgtaataacttactccaaatcttgacctttaattgtaata 42023273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 39773445 - 39773404
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  39773445 gactccaagagtaagtctattaacttactccaaatcttgacc 39773404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 6632123 - 6632087
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatct 206  Q
    |||||||||||||||| || |||||||||||||||||    
T  6632123 gactccaagagtaagtttatagacttactccaaatct 6632087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 16518499 - 16518539
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgac 210  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  16518499 gactccaagagtaagtgtaataacttactccaaatcttgac 16518539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 17238514 - 17238478
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatct 206  Q
    |||||||||||||||| || |||||||||||||||||    
T  17238514 gactccaagagtaagtttatagacttactccaaatct 17238478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 19991086 - 19991042
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgaccctt 214  Q
    |||||||||||||| || ||||| |||||||||||||| ||||||    
T  19991086 gactccaagagtaactcaaaagagttactccaaatcttaaccctt 19991042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 29981274 - 29981326
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccct 213  Q
    |||||||| ||||| |||||||||| ||||||||||||||  ||||| |||||    
T  29981274 ggatccattgactctaagagtaagtgtaaagacttactccgcatcttaaccct 29981326  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 36877431 - 36877383
Alignment:
Q  79 cattcaccacattaaatagctatttatctaaccatccaacaattatgta 127  Q
    ||||| || ||||||||  |||||||||||| |||||||||||||||||    
T  36877431 cattcgccgcattaaatctctatttatctaaacatccaacaattatgta 36877383  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 5389677 - 5389721
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatc 205  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  5389677 ggatccattgactccaagagtaagtctaaagacttactccaaatc 5389721  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 5390224 - 5390170
Alignment:
Q  151 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatc 205  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||||||||||    
T  5390224 gagagagaagggatccattgactcctagagtaagtctaaagacttactccaaatc 5390170  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 26878567 - 26878470
Alignment:
Q  171 actccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataacaatagttaatgactgtgattaattcataataattgttaaggtgg 270  Q
    |||| ||||||||||||||| || ||||||||||| || |||||||||||||    |||| ||||||    || |||||||||||||||||||||| |||    
T  26878567 actctaagagtaagtctaaacacatactccaaatcatggcccttcattttaa----aataattaatggtcttggttaattcataataattgttaagatgg 26878472  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 10296984 - 10296943
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacc 211  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  10296984 gactccaagagtaagtgtaataacttactccaaatcttgacc 10296943  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 19186447 - 19186491
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgaccctt 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  19186447 gactccaagagtaagtctaaagacttactccaaatcttaaccctt 19186491  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 42948222 - 42948158
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaataa 225  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||| ||||| || ||||||||||    
T  42948222 ggatccattgactccaagagtaagtctaaagagttactcccaatcatgacctttaattttaataa 42948158  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 15047256 - 15047336
Alignment:
Q  60 tcataataacaagacgtgtcattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca 139  Q
    |||||||  |||||| || |||||||||||||| ||| |||||||||||| ||||||||||||||| || | |||||||||    
T  15047256 tcataattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattatttatatcaatatgca 15047336  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 8610005 - 8609943
Alignment:
Q  162 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    ||||||| ||||| |||||||||  |||||| |||||||||||||||||| || |||||||||    
T  8610005 gatccattgactcaaagagtaagcataaagagttactccaaatcttgaccattaattttaata 8609943  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 15014487 - 15014575
Alignment:
Q  52 ggatgaaatcataataacaagacgtgtcattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca 139  Q
    |||||||||  ||||  ||||| |||||| |||||||  |||||| |||||||||||| ||||||| || ||||||| |||||||||||    
T  15014487 ggatgaaattgtaattccaagatgtgtcactcaccacgataaatatctatttatctaacccatccagcagttatgtacagcaatatgca 15014575  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 4927758 - 4927821
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||| || ||||||| ||||| |||||||||||||| |||||||||| ||  ||||||||    
T  4927758 ggatccattgattccaagattaagtttaaagacttactcccaatcttgaccattggttttaata 4927821  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 8609205 - 8609268
Alignment:
Q  161 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttaata 224  Q
    |||||||| |||||||||||||||| |||| | ||||||||||||||  || || |||||||||    
T  8609205 ggatccattgactccaagagtaagtataaatagttactccaaatcttagccattaattttaata 8609268  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 10555392 - 10555443
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  10555392 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 10555443  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 23237054 - 23237105
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| |||||||    
T  23237054 gactccaagagtaagtctaaagagttactccacatcctcaccctccatttta 23237105  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 23244394 - 23244343
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  23244394 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 23244343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 33766498 - 33766549
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  33766498 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 33766549  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 42994490 - 42994541
Alignment:
Q  170 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttta 221  Q
    ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||    
T  42994490 gactccaagagtaagtctaaagagttactccacatcctcacccttcaattta 42994541  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 19187033 - 19186991
Alignment:
Q  163 atccatcgactccaagagtaagtctaaagacttactccaaatc 205  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||    
T  19187033 atccattgactccaagagtaagtcaaaagacttactcctaatc 19186991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 15437369 - 15437336
Alignment:
Q  192 acttactccaaatcttgacccttcattttaataa 225  Q
    |||||||| |||||||||||||||||||||||||    
T  15437369 acttactctaaatcttgacccttcattttaataa 15437336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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