View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11563_high_2 (Length: 534)
Name: NF11563_high_2
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 4696438 - 4695955
Alignment:
| Q |
18 |
caaaaggccctaacttggatcctcaacatgagcattaatatgattagaataatagtttagaacaaaattgttaaaggaatttctccaaaatagagaaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
4696438 |
caaaaggccctaacttggatcctcaagatgagcattaatatgattagaataatagtttagaacaaaactgttaaatgaatttctccaaaatagagaaata |
4696339 |
T |
|
| Q |
118 |
ccgccacttctgtcattactactaaccgcaagaaaacaatcaaaaccaaacatataacgaaaagcttcacttttactagtgtctcgaaaagaaataaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696338 |
ccgccacttctgtcattactactaaccgcaagaaaacaatcaaaatcaaacatataacgaaaagcttcacttttactagtgtctcgaaaagaaataaagc |
4696239 |
T |
|
| Q |
218 |
atctaacttagaatatcaaacaaggtactcaagctttggaattgcactcatgttccgcaggccttgacaatttcaacatataagactcttttcgaatttc |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696238 |
atctaacttagaatatcgaacaaggtactcaagctttggaattgcactcatgttctgcaggctttgacaatttcaacatataagactcttttcgaatttc |
4696139 |
T |
|
| Q |
318 |
atcaaacaagtattcatagagttcacccctaatcgcatcaatgaaaatttgcagcaacccttgatctttaattgtatttttaataaagaggctaatagct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4696138 |
atcaaacaagtattcatagagttcacccctaatcgcatcaatgaaaatttgcagctacccttgatctttaattgtatttttaataaagaggttaatagct |
4696039 |
T |
|
| Q |
418 |
tgagccaataaatttacgatggcaattggaaacaaatcatgacggaatacctatgattatggaatgaaatagcgcaaaggcaaca |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696038 |
tgagccaataaatttacgatggcaattggaaac-aatcatgacggaatacctatgattatggaatgaaatagcgcaaaggcaaca |
4695955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University