View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11563_high_5 (Length: 392)
Name: NF11563_high_5
Description: NF11563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11563_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4695917 - 4695840
Alignment:
| Q |
4 |
taagcctaataatacgttcatatcaagcatactcaatcgaacgaaagcaaaatttctcatggtggcaaatatatcatg |
81 |
Q |
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| T |
4695917 |
taagcctaacaatacgttcatatcaagcatactcaatcgaacgaaagcaaaatttctcatggtggcaaatatatcatg |
4695840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 4695182 - 4695121
Alignment:
| Q |
248 |
gattgacaaggcaaatagatatcaaacgaaataag----tactcaaatccaaagttattagc |
305 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4695182 |
gattaacaaggcaaatagatatcgaacgaaataagtatttactcaaatccaaagttattagc |
4695121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 4695763 - 4695725
Alignment:
| Q |
148 |
aaataatcactaa-ttatttaacaacagaatcaaataca |
185 |
Q |
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| T |
4695763 |
aaataatcactaaattatttaacaacagaatcaaataca |
4695725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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